diff --git a/lib/assemblers/base.py b/lib/assemblers/base.py index 07eed88..009ef7c 100644 --- a/lib/assemblers/base.py +++ b/lib/assemblers/base.py @@ -260,7 +260,7 @@ def output_assembled_contig(output_file, contig): seq = bio.reverse_complement(seq) suffix = '_REV' - header = '>{}_{}_{} iteration={} contig_id={} score={}'.format( + header = '{}_{}_{} iteration={} contig_id={} score={}'.format( contig['iteration'], contig['contig_id'], suffix, contig['iteration'], contig['contig_id'], contig['bit_score']) diff --git a/lib/core_atram.py b/lib/core_atram.py index b1c45cd..d24dcd2 100644 --- a/lib/core_atram.py +++ b/lib/core_atram.py @@ -37,7 +37,7 @@ def assemble(args): assembly_loop(args, assembler, blast_db, query) except (TimeoutError, RuntimeError): pass - except Exception as err: # pylint: disable=broad-except + except Exception as err: log.error('Exception: {}'.format(err)) finally: assembler.write_final_output(blast_db, query)