From 371aa9bbfa74e0f11747fcff612fa5e9bb2c97f6 Mon Sep 17 00:00:00 2001 From: "raphael.lafrance@gmail.com" Date: Fri, 22 Feb 2019 10:33:59 -0500 Subject: [PATCH] Make sure temp directory exists when splitting queries #238 --- lib/core_atram.py | 3 ++- 1 file changed, 2 insertions(+), 1 deletion(-) diff --git a/lib/core_atram.py b/lib/core_atram.py index c2fa0b1..252bd8f 100644 --- a/lib/core_atram.py +++ b/lib/core_atram.py @@ -14,7 +14,6 @@ def assemble(args): """Loop thru every blast/query pair and run an assembly for each one.""" - queries = split_queries(args) with util.make_temp_dir( where=args['temp_dir'], @@ -22,6 +21,8 @@ def assemble(args): keep=args['keep_temp_dir']) as temp_dir: util.update_temp_dir(temp_dir, args) + queries = split_queries(args) + for blast_db in args['blast_db']: with db.connect(blast_db, check_version=True) as cxn: