atram_tutorial.md

Tutorial for atram.py

We assume that you have already run the Pre-processing tutorial. If not, go back and run it because you will need the output for this tutorial.

./atram.py \
  --query=/path/to/doc/data/tutorial-query.pep.fasta \
  --blast-db=/path/to/atram_db/tutorial \
  --output=/path/to/output/tutorial \
  --assembler=velvet