Name		Name	Last commit message	Last commit date
parent directory ..
driver		driver
runtime		runtime
tests		tests
AdditiveConst.v		AdditiveConst.v
AdditiveConstproof.v		AdditiveConstproof.v
CStan.v		CStan.v
CStanCont.v		CStanCont.v
CStanSemanticsBackend.v		CStanSemanticsBackend.v
CStanSemanticsTarget.v		CStanSemanticsTarget.v
Clightification.v		Clightification.v
Clightificationproof.v		Clightificationproof.v
DEVELOPERS.md		DEVELOPERS.md
DenotationalSimulation.v		DenotationalSimulation.v
DenotationalSimulationAdditive.v		DenotationalSimulationAdditive.v
DenotationalSimulationChange.v		DenotationalSimulationChange.v
DenotationalSimulationGeneric.v		DenotationalSimulationGeneric.v
INSTALL.md		INSTALL.md
ImproperRInt.v		ImproperRInt.v
IteratedRInt.v		IteratedRInt.v
Makefile		Makefile
ParamMap.v		ParamMap.v
PrintCStan.ml		PrintCStan.ml
README.md		README.md
RIntExt.v		RIntExt.v
RealsExt.v		RealsExt.v
Reparameterization.v		Reparameterization.v
Reparameterizationlemmas.v		Reparameterizationlemmas.v
Reparameterizationproof.v		Reparameterizationproof.v
Sampling.v		Sampling.v
Samplingproof.v		Samplingproof.v
Sbackend.v		Sbackend.v
Sbackendproof.v		Sbackendproof.v
Scompiler.v		Scompiler.v
Slexer.mll		Slexer.mll
Sop.v		Sop.v
Sparser.vy		Sparser.vy
Ssemantics.v		Ssemantics.v
Stan.v		Stan.v
StanEnv.v		StanEnv.v
Stanlight.v		Stanlight.v
Target.v		Target.v
Targetproof.v		Targetproof.v
Transforms.v		Transforms.v
USAGE.md		USAGE.md
VariableAllocation.v		VariableAllocation.v
VariableAllocationproof.v		VariableAllocationproof.v
parser.messages		parser.messages

README.md

General information

The ProbCompCert compiler is a prototype compiler for a subset of the Stan programming that ties into the CompCert C compiler.

The distinguishing feature of ProbCompCert is that parts of it are being formally verified using the Coq proof assistant. The goal is for the generated assembly code is formally guaranteed to behave as prescribed by the semantics of the source Stan code.

So far, we have verified 3 passes in the density compilation pipeline. These passes are interesting from a compiler correctness point of view, because they involve changes that do not necessarily preserve the "extensional" operational semantics of the program, but nevertheless preserve the probability distribution that the programs represent.

Installation

Please see INSTALL.md for instructions on getting ProbCompCert built.

Usage

For a step-by-step walkthrough that explains how to compile a Stan model, run the resulting binary, and analyze the generated output, please see USAGE.md

Overview

ProbCompCert ties directly into CompCert by generating Clight code and makes heavy use of most of the generic compiler libraries of CompCert including: Coqlib, Maps, Integers, Floats, Errors, AST, Linking, Values, Memory, Globalenvs, Smallstep, Op, Ctypes, and Clight.

Documentation on these libraries can be found in CompCert's commented Coq development

The runtime directory contains the C implementation of the runtime and of the standard library.
The tests directory contains Stan example programs and development tools.
The driver contains plain OCaml code that is used during the elaboration phase that connects the Stan language to the Stanlight language.

Commented Coq development

Languages, syntax and semantics:

Similar to CompCert, the compiler makes use of multiple languages. In CompCert, to a large extent, every syntax is asscociated with a single semantics, and a compiler pass that removes a feature maps to a new language. An exception is Clight which comes with two semantics.

In ProbCompCert, at least for now, several compiler pass remain in the same language despite removing a feature. As a result, some languages are associated with multiple semantics.

Stan: The Stan language, generated by the parser. This language is (or at least should be) faithful to the official Stan specification.
Stanlight: A subset of Stan describing valid Stan programs. In principle, any Stan program could be written in Stanlight. This language supports compiler transformation that are probabilistic in nature. Example include reparameterization.
CStan: Clight extended with an explicit target and a list of parameters and data variables. This languages supports compiler transformations that need to work at a lower level. Examples include the transformation of global variables into C structures or the initialization and return of the target.

Language	Syntax	Semantics	Notes
Stan	Stan		Does not currently have a formal semantics
Stanlight	Stanlight	Ssemantics.v	Stanlight programs are valid Stan programs
CStan	CStan	CStanSemanticsTarget CStanSemanticsBackend	CStan programs use the C type system and global environment

Parsing

The parser uses Menhir's verified parsing tools. The verified parser was largely developed by Brian Ward as part of his honor's thesis at Boston College.

Slexer.mll: lexer specification
Sparser.vy: parser specification, in Coq Menhir
error.messages: error messages

Compiler passes

Pass	Source	Target	Code	Proof
Implement sampling statement	Stanlight	Stanlight	Sampling	Samplingproof
Reparameterize constrained parameters	Stanlight	Stanlight	Reparameterization	Reparameterizationproof
Optimize out additive constants	Stanlight	Stanlight	AdditiveConst	AdditiveConstproof
Pull calls out of expressions, compile for loops, translate types to C types, translate operators	Stanlight	CStan	Clightification	Clightificationproof
Replace gloval parameters and data by structures	CStan	CStan	AllocateVariables	AllocateVariablesproof
Explicit target	CStan	CStan	Target	Targetproof
Generate Clight	CStan	Clight	Sbackend	Sbackendproof

All together

Scompiler: defines the overall compilation and proof of semantics preservation

To learn more

Check out DEVELOPERS.md for additional information on some of the files, and tips about extending the compiler and run time.

Files

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