/
venv_EVI.yml
58 lines (58 loc) · 1.07 KB
/
venv_EVI.yml
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name: venv_EVI
channels:
- conda-forge
- bioconda
- defaults
dependencies:
- scanpy=1.8.1
- scvelo=0.2.3
- loompy=3.0.6
- python>=3.6
- r=4.1
- ipython=7.27.0
- ipython_genutils=0.2.0
- ipykernel=6.4.1
- ipywidgets=7.6.4
- notebook=6.4.0
- numpy=1.19.5
- pandas=1.1.5
- scikit-learn=0.24.1
- scipy=1.7.1
- pip=21.2.4
- make=4.3
- curl=7.78.0
- igraph=0.9.4
- leidenalg=0.8.7
- louvain=0.7.0
- networkx=2.5
- phate=1.0.7
- python-igraph=0.9.6
- numba=0.53.0
- joblib=1.0.1
- scprep=1.1.0
- graphtools=1.5.2
- cellrank=1.1.0
- seaborn=0.11.1
- matplotlib-base=3.4.2
- anndata=0.7.6
- anndata2ri=1.0.6
- rpy2=3.4.5
- natsort=7.1.1
- hdf5=1.10.6
- llvmlite=0.36.0
- simplegeneric=0.8.1
- statsmodels=0.12.2
- r-dplyr=1.0.7
- r-tidyr=1.1.3
- r-tidyverse=1.3.1
- r-matrix=1.3_4
- r-matrixstats=0.60.1
- r-seurat=4.1.1
- bioconductor-matrixgenerics=1.4.0
- pip:
- geosketch==1.2
- harmonypy==0.0.5
- snfpy==0.2.2
- mofapy2==0.6.4
- scanorama==1.7.2
- git+https://github.com/gtca/mofax