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Q #6

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SimonHuo opened this issue Apr 17, 2021 · 1 comment
Open

Q #6

SimonHuo opened this issue Apr 17, 2021 · 1 comment

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@SimonHuo
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In the GEO/airway_RNAseq/kegg_and_go_up_and_down.R, the kk=DOSE::setReadable(kk, OrgDb='org.Hs.eg.db',keytype='ENTREZID') should change into kk=DOSE::setReadable(kk, OrgDb='org.Hs.eg.db',keyType='ENTREZID'). Or, the code will be wrong.
@SimonHuo
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As the result of the default metaset，the last go analysis, go <- enrichGO(gene_down, OrgDb = "org.Hs.eg.db", ont="all") , did not have the result because of the default p value.

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@SimonHuo