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DESCRIPTION
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DESCRIPTION
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Package: TyphoonPlot
Title: Creating Genomic Typhoon Plots
Version: 1.2.0
Date: 2017-05-18
Authors@R: person(given = "Jason", middle = "A", family = "Belsky",
email = "jabelsky@gmail.com",
role = c("aut", "cre")
)
Description: Provides both processing and graphics helper functions to create a
Typhoon Plot, which is a two-dimensional visualization method of paired-end
next-generation sequencing reads. The x-axis represents the genomic
position, and the y-axis the fragment length. Typhoon Plots are created
first by creating a data matrix, and are then subsequently displayed
using the DensDotPlot function, a wrapper for the base image() function
Depends:
R (>= 3.2.0)
License: What license is it under?
LazyData: true
Imports:
GenomeInfoDb (>= 1.2.4),
GenomicRanges (>= 1.18.4),
gplots (>= 2.16.0),
IRanges (>= 2.0.1),
Rsamtools (>= 1.18.3),
S4Vectors (>= 0.4.0),
splus2R (>= 1.2.0)
URL: http://www.github.com/jbelsky/TyphoonPlot
BugReports: http://www.github.com/jbelsky/TyphoonPlot/issues
RoxygenNote: 6.0.1