/
VizualAgePlotting.ipf
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VizualAgePlotting.ipf
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//########################################################
// VisualAge add-on for Iolite
// Written by Joe Petrus
// Version 2015.06
//########################################################
#pragma rtGlobals=1
//########################################################
// Histogram related functions
//########################################################
//------------------------------------------------------------------------
// Histogram creation -- called when histogram is selected from the menu
//------------------------------------------------------------------------
Function AgeHistogram()
// Make sure VisualAge has been initialized:
VAInitialized()
// Get some variables from Iolite:
String MatrixName = GetMatrixName()
SVAR ListOfOutputChannels = $ioliteDFpath("Output", "ListOfOutputChannels")
Variable NoOfChannels = ItemsInList(ListOfOutputChannels)
// Get the default histogram plotting parameters:
NVAR DefaultStartAge = root:Packages:VisualAge:Options:HistogramOption_StartAge
NVAR DefaultStopAge = root:Packages:VisualAge:Options:HistogramOption_StopAge
NVAR DefaultBinSize = root:Packages:VisualAge:Options:HistogramOption_BinSize
NVAR hcount = root:Packages:VisualAge:HistogramCount
// Get a list of ages available to plot:
String ListOfHistogramOptions= ""
Variable i
For ( i = 0; i < NoOfChannels; i = i + 1)
String CurrentChannel = StringFromList(i, ListOfOutputChannels)
If ( StrSearch(CurrentChannel, "Age", 0) != -1 )
ListOfHistogramOptions = ListOfHistogramOptions + CurrentChannel + ";"
EndIf
EndFor
// Ask the user which age they'd like to plot and how to plot it:
String HistAge = ""
String HistInt = MatrixName
String HistName = "Hist" + num2str(hcount)
Variable HistStartAge = DefaultStartAge
Variable HistStopAge = DefaultStopAge
Variable HistBinSize = DefaultBinSize
Prompt HistName, "Name of histogram: "
Prompt HistAge, "Which age? ", popup, ListOfHistogramOptions
Prompt HistInt, "Which integration type? ", popup, GetListOfUsefulIntegrations()
Prompt HistStartAge, "Start age [Ma]: "
Prompt HistStopAge, "Stop age [Ma]: "
Prompt HistBinSize, "Bin size [Ma]: "
// Ensure that the name given doesn't conflict with a built in Igor Pro name:
Do
DoPrompt/HELP="" "VisualAge Histogram", HistName, HistStartAge,HistInt, HistStopAge, HistAge, HistBinSize
If ( V_Flag )
Return -1
EndIf
If ( CheckName(HistName, 1) != 0 )
DoAlert/T="VisualAge" 0, "The name you have entered is reserved in Igor Pro. Please try a different name."
Elseif ( !AlphaNumeric(HistName) )
DoAlert/T="VisualAge" 0, "The name you enter must be alphanumeric (no symbols, except \"_\")"
EndIf
While ( CheckName(HistName, 1) != 0 || !AlphaNumeric(HistName))
// Ensure name starts with a letter:
If (char2num(HistName[0]) < 57 && char2num(HistName[0]) > 48 )
HistName = "h" + HistName
EndIf
// Check if histogram exists:
String HistPathAndName = "root:Packages:VisualAge:Histograms:" + HistInt + ":" + HistAge + ":" + HistName + "Counts"
If (WaveExists($HistPathAndName))
DoAlert/T="VisualAge" 1, "A histogram named " + HistName + " for " + HistInt + " already exists. Would you like to replace it?"
If (V_flag != 1)
Return -1
EndIf
String actualWinName = Note($HistPathAndName)
KillWindow $actualWinName
KillWaves/Z root:Packages:VisualAge:Histograms:$(HistInt):$(HistAge):$(HistName + "Counts")
KillWaves/Z root:Packages:VisualAge:Histograms:$(HistInt):$(HistAge):$(HistName + "Bins")
KillWaves/Z root:Packages:VisualAge:Histograms:$(HistInt):$(HistAge):$(HistName + "KDE")
KillWaves/Z root:Packages:VisualAge:Histograms:$(HistInt):$(HistAge):$(HistName + "PDP")
KillWaves/Z root:Packages:VisualAge:Histograms:$(HistInt):$(HistAge):$(HistName + "TicksY")
KillWaves/Z root:Packages:VisualAge:Histograms:$(HistInt):$(HistAge):$(HistName + "TicksX")
EndIf
// Create a folder for the histogram data:
NewDataFolder/O/S root:Packages:VisualAge:Histograms
NewDataFolder/O/S $HistInt
NewDataFolder/O/S $HistAge
// Get matrix for the selected integration:
Wave aim = $ioliteDFpath("integration", "m_" + HistInt)
Variable NoOfIntegrations = DimSize(aim,0) - 1
// Get ages from Iolite + store in a wave:
Make/O/N=(NoOfIntegrations) InputDataNumbers
Make/O/N=(NoOfIntegrations) InputData2SE
Wave ResultWave = $MakeioliteWave("CurrentDRS", "ResultWave", n=2)
For ( i = 1; i <= NoOfIntegrations; i = i + 1 )
GetIntegrationFromIolite(HistAge, HistInt, i, "ResultWave")
InputDataNumbers[i-1] = ResultWave[0]
InputData2SE[i-1][0] = ResultWave[1]
EndFor
Variable MaxAgeInData = WaveMax(InputDataNumbers)
Variable MinAgeInData = WaveMin(InputDataNumbers)
Variable AgeSpread = MaxAgeInData - MinAgeInData
// Variable bw = sqrt(0.28*numpnts(InputDataNumbers)^(-2/5))*(AgeSpread)
NVAR bw = root:Packages:VisualAge:Options:HistogramOption_KDEbw
Variable nx = min(round(1000*(AgeSpread+8*bw)/bw),1000)
Variable xmin=MinAgeInData-4*bw
Variable xmax=MaxAgeInData+4*bw
// If the start and stop ages were specified as -1, try to guess at reasonable values (currently pretty bad):
If ( (HistStartAge == -1 || numtype(HistStartAge) == 2) && (HistStopAge == -1 || numtype(HistStopAge) == 2) )
HistStartAge = FloorToSig(MinAgeInData, ceil(log(AgeSpread)))
HistStopAge = CeilToSig(MaxAgeInData, ceil(log(AgeSpread)))
EndIf
// If the bin size is set to -1 split up the range into about 40 bins:
If ( HistBinSize == -1 || numtype(HistBinSize) == 2)
HistBinSize = FloorToSig((HistStopAge-HistStartAge)/40, 1)
EndIf
Variable NoOfBins = round((HistStopAge-HistStartAge)/HistBinSize)
// Create histogram + display:
Make/N=(NoOfBins)/O $(HistName + "Counts"), $(HistName + "Bins")
Histogram/B={HistStartAge, HistBinSize, NoOfBins} InputDataNumbers,$(HistName + "Counts")
Display/K=1/N=$HistName $(HistName + "Counts") as HistInt + " " + HistAge
// Set some user data for the graph to be accessed by the hook function and others:
SetWindow $S_name, userdata(Name)=HistName
SetWindow $S_name, userdata(IntType)=HistInt
SetWindow $S_name, userdata(AgeType)=HistAge
SetWindow $S_name, userdata(Type)="Histogram"
Note/K $(HistName + "Counts"), S_name
// Make the bin wave:
Wave Bins = $(HistName + "Bins")
For (i = 0; i < NoOfBins; i = i + 1)
Bins[i] = HistStartAge + HistBinSize*i
EndFor
// Calculate a probability distribution if desired (this could use some work!!):
NVAR DoPDF = root:Packages:VisualAge:Options:HistogramOption_ShowPDP
If (DoPDF)
Make/O/N=(nx) $(HistName+"PDP")
Wave pdp = $(HistName+"PDP")
For(i = 0; i < numpnts(InputDataNumbers); i = i + 1)
Variable j
For(j = 0; j < nx; j = j + 1)
pdp[j] += StatsNormalPDF(xmin+j*(xmax-xmin)/nx, InputDataNumbers[i], InputData2SE[i]/2)
EndFor
EndFor
SetScale /P x, xmin, (xmax-xmin)/nx, pdp
Variable pdp_norm = sum(pdp)*deltax(pdp)
pdp = pdp/pdp_norm
AppendToGraph/R pdp
ModifyGraph mode($(HistName+"PDP"))=0
ModifyGraph rgb($(HistName+"PDP"))=(65535,0,0)
EndIf
// Calculate KDE and plot if desired:
NVAR DoKDE = root:Packages:VisualAge:Options:HistogramOption_ShowKDE
If (DoKDE)
Variable kde_norm
Make /d/free/n=(numpnts(InputDataNumbers)) wweights=1
FastGaussTransform /TET=500/WDTH=(bw) /RX=(bw/100)/OUT1={xmin,nx,xmax} InputDataNumbers,wweights // you may need to tweak /RX flag value /RX=(8*bw)/TET=200
Wave M_FGT; kde_norm=sum(M_FGT)*deltax(M_FGT); M_FGT /= kde_norm;
String wn=HistName+"KDE"; duplicate /d/o M_FGT $wn
KillWaves M_FGT
AppendToGraph/R $wn
EndIf
NVAR DoTicks = root:Packages:VisualAge:Options:HistogramOption_ShowTicks
If (DoTicks)
Make/O/N=(numpnts(InputDataNumbers)) $(HistName+"TicksY")=0, $(HistName+"TicksX")=0
Wave TickXData = $(HistName+"TicksX")
TickXData = InputDataNumbers
AppendToGraph $(HistName+"TicksY") vs $(HistName+"TicksX")
EndIf
// Adjust graph properties:
Label bottom HistAge + " [Ma]"
if (DoPDF || DoKDE)
Label right "Probability"
endif
Label left "Counts"
ModifyGraph mirror(bottom)=2, standoff=0, gFont="Helvetica", gfSize=16, axisOnTop(bottom)=1
If (!DoPDF && !DoKDE)
ModifyGraph mirror(left)=1
EndIf
ModifyGraph width=600,height=400
// Histogram:
ModifyGraph rgb($(HistName + "Counts"))=(0,0,0)
ModifyGraph lsize($(HistName + "Counts"))=1.5
ModifyGraph mode($(HistName + "Counts"))=6
// PDP:
If (DoPDF)
ModifyGraph rgb($(HistName + "PDP")) = (65535,0,0)
EndIf
// KDE:;
If (DoKDE)
ModifyGraph rgb($(HistName + "KDE")) = (0,0,65535)
EndIf
// Ticks:
If (DoTicks)
ModifyGraph mode($(HistName+"TicksY"))=3
ModifyGraph marker($(HistName+"TicksY"))=10
ModifyGraph rgb($(HistName+"TicksY"))=(0,0,0)
EndIf
// Legend:
String LegendString = "\\s(" + HistName + "Counts) Histogram\r"
If (DoPDF)
LegendString += "\\s(" + HistName + "PDP) Probability distribution\r"
EndIf
If (DoKDE)
LegendString += "\\s(" + HistName + "KDE) Kernel density estimate\r"
EndIf
If (DoTicks)
LegendString += "\\s(" + HistName + "TicksY) Individual ages\r"
EndIf
LegendString += "N = " + num2str(numpnts(InputDataNumbers))
Legend/C/N=HistLegend/J/A=MC LegendString
Legend/C/N=HistLegend/J/A=LT/X=0.5/Y=0.5
// Round up y-axis max to nearest 10:
Variable CountMax = 10*ceil(WaveMax($(HistName + "Counts"))/10)
SetAxis left 0, CountMax
// Determine some stats and add them as an annotation:
//NVAR ShowStats = root:Packages:VisualAge:Options:HistogramOption_ShowStats
//If (ShowStats)
// WaveStats/Q/Z InputDataNumbers
// String InfoStr = "Mean = " + num2str(V_avg) + " Ma \rStdev = " + num2str(V_sdev) + "\rN = " + num2str(V_npnts)
// TextBox/C/N=HistText/A=RT InfoStr
//EndIf
// Set the histogram hook function:
SetWindow kwTopWin, hook(histHook) = AgeHistogramHook
// Histogram counter increment
hcount = hcount + 1
KillWaves InputDataNumbers, InputData2SE
End
//------------------------------------------------------------------------
// Hook function for histogram window - shows the age corresponding to the mouse position
//------------------------------------------------------------------------
Function AgeHistogramHook(s)
STRUCT WMWinHookStruct &s
// Main hook switch:
Switch(s.eventCode)
// Mouse button down event:
Case 3:
// If shift isn't down break:
If (s.eventmod != 3)
Break
EndIf
// Determine age corresponding to x-coord:
GetWindow kwTopWin, psize
Variable pmin = V_left
Variable pmax = V_right
Variable pvmin = V_top
Variable pvmax = V_bottom
GetAxis/Q bottom
Variable amin = V_min
Variable amax = V_max
Variable xval = (amax-amin)*(s.mouseLoc.h-pmin)/(pmax-pmin) + amin
Variable xa = 100*(s.mouseLoc.h-pmin)/(pmax-pmin)
Variable ya = 100*(s.mouseLoc.v-pvmin)/(pvmax-pvmin)
// Add/move tag:
TextBox/C/N=HistMouseInfo/F=0/A=LT/X=(xa+2)/Y=(ya+2) num2str(xval) + " Ma"
Break
// Window killed:
Case 2:
// Delete data for this window:
String HistName = GetUserData(s.winName,"", "Name")
String IntType = GetUserData(s.winName,"","IntType")
String AgeType = GetUserData(s.winName,"","AgeType")
RemoveFromGraph/Z $(Histname + "Counts")
RemoveFromGraph/Z $(HistName + "PDP")
RemoveFromGraph/Z $(HistName + "KDE")
RemoveFromGraph/Z $(HistName + "TicksY")
KillWaves/Z root:Packages:VisualAge:Histograms:$(IntType):$(AgeType):$(HistName + "Counts")
KillWaves/Z root:Packages:VisualAge:Histograms:$(IntType):$(AgeType):$(HistName + "Bins")
KillWaves/Z root:Packages:VisualAge:Histograms:$(IntType):$(AgeType):$(HistName + "PDP")
KillWaves/Z root:Packages:VisualAge:Histograms:$(IntType):$(AgeType):$(HistName + "KDE")
KillWaves/Z root:Packages:VisualAge:Histograms:$(IntType):$(AgeType):$(HistName + "PDF")
KillWaves/Z root:Packages:VisualAge:Histograms:$(IntType):$(AgeType):$(HistName + "TicksX")
KillWaves/Z root:Packages:VisualAge:Histograms:$(IntType):$(AgeType):$(HistName + "TicksY")
KillWaves/Z root:Packages:VisualAge:Histograms:$(IntType):$(AgeType):$(HistName + "PDFBins")
KillWaves/Z root:Packages:VisualAge:Histograms:$(IntType):$(AgeType):$(HistName + "BinSigma")
Break
EndSwitch
Return 0
End
//########################################################
// Concordia related functions
//########################################################
//------------------------------------------------------------------------
// Concordia creation -- called when the menu item is selected
//------------------------------------------------------------------------
Function Concordia(doTW)
Variable doTW
// Make sure VisualAge is initialized:
VAInitialized()
// Get some info from Iolite:
String MatrixName = GetMatrixName()
SVAR ListOfOutputChannels = $ioliteDFpath("Output", "ListOfOutputChannels")
Variable NoOfChannels = ItemsInList(ListOfOutputChannels)
// Get a list of options... kind of a complicated way to find Final, FinalAnd, or FinalPbC:
String ListOfConcordiaOptions = ""
Variable i
For ( i = 0; i < NoOfChannels; i = i + 1)
String currentChannel = StringFromList(i, ListOfOutputChannels)
If ( StrSearch(currentChannel, "207_235", 0) != -1 && StrSearch(currentChannel, "Age",0) == -1 )
ListOfConcordiaOptions = ListOfConcordiaOptions + RemoveEnding(currentChannel, "207_235") + ";"
EndIf
EndFor
// Ask the user which version and integration they'd like to plot:
NVAR ccount = root:Packages:VisualAge:ConcordiaCount
String ConcVersion = "Final"
String ConcInteg = MatrixName
String ConcName = "Conc" + num2str(ccount) // Defaults to "Conc" + the conc counter value
Prompt ConcName, "Name of diagram: "
Prompt ConcVersion, "Which Version? ", popup, ListOfConcordiaOptions
Prompt ConcInteg, "Which Integration? ", popup, GetListOfUsefulIntegrations()
// Ensure that the name given doesn't conflict with a built in Igor Pro name:
Do
DoPrompt "VisualAge Concordia", ConcName, ConcVersion, ConcInteg
If (V_Flag)
Return -1
EndIf
If ( CheckName(ConcName, 1) != 0 )
DoAlert/T="VisualAge" 0, "The name you have entered is reserved in Igor Pro. Please try a different name."
Elseif( !AlphaNumeric(ConcName) )
DoAlert/T="VisualAge" 0, "The name you enter must be alphanumeric (no symbols, except \"_\")"
EndIf
While ( CheckName(ConcName, 1) != 0 || !AlphaNumeric(ConcName))
// Ensure name starts with a letter:
If (char2num(ConcName[0]) < 57 && char2num(ConcName[0]) > 48 )
ConcName = "c" + ConcName
EndIf
// Check if concordia exists:
If (DataFolderExists("root:Packages:VisualAge:ConcordiaDiagrams:" + ConcInteg + ":" + ConcName) )
DoAlert/T="VisualAge" 1, "A concordia diagram named " + ConcName + " for " + ConcInteg + " already exists. Would you like to replace it?"
If (V_flag != 1)
Return -1
EndIf
KillWindow $ConcName
KillDataFolder/Z root:Packages:VisualAge:ConcordiaDiagrams:$(ConcInteg):$(ConcName)
EndIf
// Set the data folder for this concordia diagram:
NewDataFolder/O/S root:Packages:VisualAge:ConcordiaDiagrams
NewDataFolder/O/S $ConcInteg
NewDataFolder/O/S $ConcName
// Determine the number of integrations:
Wave aim = $ioliteDFpath("integration", "m_" + ConcInteg)
Variable NoOfIntegrations = DimSize(aim,0) -1
// Plot the concordia:
NVAR MarkerSep = root:Packages:VisualAge:Options:ConcordiaOption_MarkerSep
GenerateConcordia(ConcName, 0, 5e9, NoOfPoints=100000, NoOfMarkers=5e9/(MarkerSep*1e6), doTW=doTW,ConcFolder=GetDataFolder(1))
Wave conX = $(ConcName + "X"), conY = $(ConcName + "Y")
Wave conMX = $(ConcName + "MarkerX"), conMY = $(ConcName + "MarkerY")
DoWindow/K $ConcName
Display/N=$ConcName/K=1
AppendToGraph conY vs conX
AppendToGraph conMY vs conMX
// Create tags:
For (i = 1; i < 5e9/(markerSep*1e6); i = i +1)
String tagStr = "tag" + num2str(i)
String tagValue = num2str(markerSep*(i)) + " Ma"
String traceStr = ConcName + "MarkerY"
Tag/N=$tagStr/A=RC/F=0/Z=1/I=1/B=1/X=-0.5/Y=0.5/L=0/AO=0 $traceStr, i, tagValue
EndFor
// Set properties of concordia wave:
ModifyGraph lStyle($(ConcName + "Y")) = 0
ModifyGraph lSize($(ConcName + "Y")) = 1.5
ModifyGraph rgb($(ConcName + "Y"))=(0,0,0)
// Set properties for time symbols:
ModifyGraph marker($(ConcName + "MarkerY"))=19
ModifyGraph msize($(ConcName + "MarkerY"))=5
ModifyGraph mode($(ConcName + "MarkerY"))=3
ModifyGraph rgb($(ConcName + "MarkerY"))=(65000,0,0)
// Set general graph properties:
ModifyGraph standoff(bottom)=0
ModifyGraph standoff(left)=0
ModifyGraph gFont="Helvetica",gfSize=14
ModifyGraph width=600,height=475
ModifyGraph mirror=2
// Set labels according to which plotting style was used:
If (!doTW)
Label bottom "\\S207\\MPb \\Z20/\\M \\S235\\MU"
Label left "\\S206\\MPb \\Z20/\\M\\S238\\MU"
Else
Label bottom "\\S238\\MU \\Z20/\\M \\S206\\MPb"
Label left "\\S207\\MPb \\Z20/\\M\\S206\\MPb"
EndIf
// Add integrations to the diagram; hide if ellipse size or discordance is outside specified values:
For (i = 1; i <= NoOfIntegrations; i = i + 1)
String EllipseInfo = AddToConcordiaByIntegration(i, concVersion, concInteg, ConcName, doTW=doTW)
If ( str2num(StringByKey("ErrorIsBig", EllipseInfo)) == 1 || str2num(StringByKey("DiscPercentGreaterThanCutoff", EllipseInfo)) == 1 || str2num(StringByKey("DiscPercentLessThanCutoff", EllipseInfo)) == 1)
ModifyGraph hideTrace($StringByKey("Handle", EllipseInfo))=1
EndIf
EndFor
// Calculate the ConcAge:
NVAR DoConcAge = root:Packages:VisualAge:Options:ConcordiaOption_ShowConcAge
If (DoConcAge)
CalculateConcAge(ConcVersion, ConcInteg, ConcFolder=GetDataFolder(1), AddToPlot=1, AddAnnotation=1, doTW=doTW)
EndIf
// Fit a line:
NVAR FitLine = root:Packages:VisualAge:Options:ConcordiaOption_FitLine
If (FitLine)
ConcordiaFitLine(ConcVersion, ConcInteg, doTW)
EndIf
// Set some window data variables
SetDataFolder root:Packages:VisualAge:ConcordiaDiagrams:$(ConcInteg):$(ConcName)
SetWindow $ConcName, userdata(CurrentTraces) = TraceNameList(ConcName, ";", 1)
SetWindow $ConcName, userdata(PreviouslyActiveTrace) = ""
SetWindow $ConcName, userdata(ConcName) = ConcName
SetWindow $ConcName, userdata(ConcVersion) = ConcVersion
SetWindow $ConcName, userdata(ConcInteg) = ConcInteg
SetWindow $ConcName, userdata(doTW) = num2str(doTW)
SetWindow $ConcName, userdata(ConcFolder) = "root:Packages:VisualAge:ConcordiaDiagrams:" + ConcInteg + ":" + ConcName
SetWindow $ConcName, userdata(NameFolder)= ConcName
SetWindow $ConcName, userdata(IntegFolder) = ConcInteg
SetWindow $ConcName, userdata(Type) = "Concordia"
// Auto scale:
Variable DataMinX, DataMaxX, DataMinY, DataMaxY
If (!doTW)
DataMinX = GetMin(concInteg, concVersion + "207_235")
DataMaxX = GetMax(concInteg, concVersion + "207_235")
DataMinY = GetMin(concInteg, concVersion + "206_238")
DataMaxY = GetMax(concInteg, concVersion + "206_238")
Else
DataMinX = GetMin(concInteg, concVersion + "238_206")
DataMaxX = GetMax(concInteg, concVersion + "238_206")
DataMinY = GetMin(concInteg, concVersion + "207_206")
DataMaxY = GetMax(concInteg, concVersion + "207_206")
EndIf
Variable NewMinX = FloorToSig((DataMinX+DataMaxX)/2 - 2*(DataMaxX-DataMinX), 2)
Variable NewMaxX = CeilToSig((DataMinX+DataMaxX)/2 + 2*(DataMaxX-DataMinX), 2)
Variable NewMinY = FloorToSig((DataMinY+DataMaxY)/2 - 2*(DataMaxY-DataMinY), 2)
Variable NewMaxY = CeilToSig((DataMinY+DataMaxY)/2 + 2*(DataMaxY-DataMinY), 2)
SetAxis bottom, NewMinX, NewMaxX
SetAxis left, NewMinY, NewMaxY
// Increment concordia counter:
ccount = ccount + 1
// Set the concordia window hook function:
SetWindow kwTopWin, hook(concHook) = ConcordiaHook
End
// The below code is useful for filled in ellipses... not currently activated.
//Menu "TracePopup", dynamic
// "-"
// SubMenu "Ellipse"
// "None", ModifyEllipse()
// "Solid", ModifyEllipse()
// SubMenu "Color"
// "*COLORPOP*", ModifyEllipse()
// End
// SubMenu "Pattern"
// "*PATTERNPOP*", ModifyEllipse()
// End
// End
//End
//
//Function ModifyEllipse()
// GetLastUserMenuInfo
//
// String GraphType = GetUserData(WinName(0,1), "", "Type")
// If (cmpstr(GraphType, "Concordia") != 0)
// Return 0
// EndIf
//
// If (cmpstr(S_traceName[strlen(S_traceName)-1],"b")==0)
// S_traceName = S_traceName[0,strlen(S_traceName)-2]
// EndIf
//
// Print V_flag
// print V_value
// print s_value
// print S_traceName
//
//
// Switch(V_flag)
// // None selected:
// Case 0:
// // Remove fill:
// If (V_value == 1)
// ModifyGraph mode($S_traceName)=0,lsize($S_traceName)=1
// ModifyGraph mode($(S_traceName + "b"))=0, lsize($(S_traceName + "b"))=1
// Elseif (V_value == 2)
// ModifyGraph rgb($S_traceName)=(0,0,0), lstyle($S_traceName)=0, lsize($S_traceName)=0
// ModifyGraph rgb($(S_traceName +"b"))=(0,0,0), lstyle($(S_traceName + "b"))=0, lsize($(S_traceName + "b"))=0
// ModifyGraph mode($S_traceName)=7,hbFill($S_traceName)=2,useNegPat($S_traceName)=1,toMode($S_traceName)=1
// EndIf
// Break
//
// Case 7:
// ModifyGraph hbFill($S_traceName)=V_value+5
// Break
//
// Case 10:
// ModifyGraph rgb($S_traceName)=(V_red,V_green,V_blue)
// Break
//
// EndSwitch
//End
//------------------------------------------------------------------------
// Hook function for the concordia window that shows some age info for the nearest ellipse
//------------------------------------------------------------------------
Function ConcordiaHook(s)
STRUCT WMWinHookStruct &s
// Make sure VisualAge is initialized:
VAInitialized()
// If the concordia diagram isn't the top window, exit:
If (CmpStr(WinName(0,1), s.winName) != 0)
Return 0
EndIf
// Get required data from the graph:
String PreviouslyActiveTrace = GetUserData(s.winName, "", "PreviouslyActiveTrace")
String CurrentTraces = GetUserData(s.winName, "", "CurrentTraces")
String ConcFolder = GetUserData(s.winName, "", "ConcFolder")
String ConcVersion = GetUserData(s.winName, "", "ConcVersion")
String ConcInteg = GetUserData(s.winName, "", "ConcInteg")
String ConcName = GetUserData(s.winName, "", "ConcName")
Variable doTW = str2num(GetUserData(s.winName, "", "doTW"))
Wave aim = $ioliteDFpath("integration", "m_" + ConcInteg)
Variable NoOfIntegrations = DimSize(aim,0)
// Main switch control:
Switch(s.eventCode)
// Mouse scroll event:
Case 22:
GetAxis/W=$s.winname/Q Bottom
Variable cMinx = V_min
Variable cMaxx = V_max
GetAxis/W=$s.winname/Q Left
Variable cMiny = V_min
Variable cMaxy = V_max
Variable cMeanx = (cMinx+cMaxx)/2
Variable cMeany = (cMiny+cMaxy)/2
Variable axisScaler =s.wheelDy/50
Variable nMinx = cMinx + (cMeanx-cMinx)*axisScaler
Variable nMaxx = cMaxx - (cMaxx-cMeanx)*axisScaler
Variable nMiny = cMiny + (cMeany-cMiny)*axisScaler
Variable nMaxy = cMaxy - (cMaxy-cMeany)*axisScaler
If ( (s.eventMod & 8) == 8 || s.eventMod == 0)
SetAxis/W=$s.winname Bottom, nMinx, nMaxx
EndIf
If ( (s.eventMod & 4) == 4 || s.eventMod == 0)
SetAxis/W=$s.winname Left, nMiny, nMaxy
EndIf
Break
// Key pressed event:
Case 11:
// Switch depending on which key was pressed:
Switch (s.keycode)
// r pressed:
Case 114:
// Auto scale the diagram:
Variable DataMinX, DataMaxX, DataMinY, DataMaxY
If (!doTW)
DataMinX = GetMin(concInteg, concVersion + "207_235")
DataMaxX = GetMax(concInteg, concVersion + "207_235")
DataMinY = GetMin(concInteg, concVersion + "206_238")
DataMaxY = GetMax(concInteg, concVersion + "206_238")
Else
DataMinX = GetMin(concInteg, concVersion + "238_206")
DataMaxX = GetMax(concInteg, concVersion + "238_206")
DataMinY = GetMin(concInteg, concVersion + "207_206")
DataMaxY = GetMax(concInteg, concVersion + "207_206")
EndIf
Variable NewMinX = FloorToSig((DataMinX+DataMaxX)/2 - 2*(DataMaxX-DataMinX), 2)
Variable NewMaxX = CeilToSig((DataMinX+DataMaxX)/2 + 2*(DataMaxX-DataMinX), 2)
Variable NewMinY = FloorToSig((DataMinY+DataMaxY)/2 - 2*(DataMaxY-DataMinY), 2)
Variable NewMaxY = CeilToSig((DataMinY+DataMaxY)/2 + 2*(DataMaxY-DataMinY), 2)
SetAxis bottom, NewMinX, NewMaxX
SetAxis left, NewMinY, NewMaxY
Break
// z pressed:
Case 122:
// Draw a contour on the diagram:
If ( FindListItem("ContourData", ContourNameList(s.winname, ";")) == -1)
// Add contour if it isn't already there:
KillWaves/Z ContourData, ContourX, ContourY
If (!doTW)
Wave xwave = $ioliteDFpath("CurrentDRS", ConcVersion + "207_235")
Wave ywave = $ioliteDFpath("CurrentDRS", ConcVersion + "206_238")
Else
Wave xwave = $ioliteDFpath("CurrentDRS", ConcVersion + "238_206")
Wave ywave = $ioliteDFpath("CurrentDRS", ConcVersion + "207_206")
EndIf
Wave Index_Time = $ioliteDFpath("CurrentDRS", "Index_Time")
Variable startTime, stopTime
Variable startIndex, stopIndex
Variable Nbins = 100
GetAxis/W=$s.winname/Q Bottom
Variable MinX = V_min
Variable MaxX = V_max
GetAxis/W=$s.winname/Q Left
Variable MinY = V_min
Variable MaxY = V_max
Make/O/N=(Nbins,Nbins) ContourData
Make/O/N=(Nbins) ContourX, ContourY
Variable StartX = MinX, StopX = MaxX, BinX = (StopX-StartX)/Nbins
Variable StartY = MinY, StopY = MaxY, BinY = (StopY-StartY)/Nbins
Variable i
For ( i = 0; i < Nbins; i = i + 1)
ContourX[i] = (i )*BinX + StartX
ContourY[i] = (i )*BinY + StartY
EndFor
// Fill data matrix:
For ( i = 1; i <= NoOfIntegrations; i = i + 1)
startTime = aim[i][0][%$"Median Time"]-aim[i][0][%$"Time Range"]
stopTime = aim[i][0][%$"Median Time"]+aim[i][0][%$"Time Range"]
startIndex = ForBinarySearch(Index_Time, startTime) + 1
If (numtype(Index_Time[startIndex]) == 2)
startIndex += 1
EndIf
stopIndex = ForBinarySearch(Index_Time, stopTime)
If (stopIndex == -2)
stopIndex = numpnts(Index_Time) - 1
EndIf
Variable j
For ( j = startIndex; j < stopIndex; j = j + 1)
Variable cx = xwave[j]
Variable cy = ywave[j]
Variable ix = (cx-StartX)/BinX
Variable iy = (cy-StartY)/BinY
if (numtype(ix) == 2 || numtype(iy) == 2 || ix < 0 || iy < 0 || ix > Nbins || iy > Nbins)
continue
endif
ContourData[ix][iy] = ContourData[ix][iy] + 1
EndFor
EndFor
// Append + modify contour:
AppendMatrixContour ContourData vs {ContourX, ContourY}
ModifyContour ContourData update=1,labels=0,autoLevels={*,*,100}, ctabLines={*,*,Rainbow,1}
Else
// Remove the contour if it is already there:
RemoveContour/W=$s.winname ContourData
EndIf
Break
// a pressed:
Case 97:
// Add the individual data points to the graph:
If (FindListItem("ywave", TraceNameList(s.winname, ";", 1)) == -1)
// Add points to graph if they aren't already there:
KillWaves/Z $(ConcFolder + ":ywave"), $(ConcFolder + ":xwave")
If (!doTW)
Duplicate root:Packages:iolite:output:VisualAgeDRS:$(ConcVersion + "206_238"), $(ConcFolder + ":ywave")
Duplicate root:Packages:iolite:output:VisualAgeDRS:$(ConcVersion + "207_235"), $(ConcFolder + ":xwave")
Else
Duplicate root:Packages:iolite:output:VisualAgeDRS:$(ConcVersion + "207_206"), $(ConcFolder + ":ywave")
Duplicate root:Packages:iolite:output:VisualAgeDRS:$(ConcVersion + "238_206"), $(ConcFolder + ":xwave")
EndIf
Wave xwave = $(ConcFolder + ":xwave")
Wave ywave = $(ConcFolder + ":ywave")
GenerateIntegrationIndex(ConcFolder)
Wave IntInd = $(ConcFolder + ":IntInd")
Variable Cind = GetIntInd(ConcInteg)
Variable xi
For (xi = 0; xi < numpnts(xwave); xi = xi + 1)
If ( numtype(xwave[xi]) == 2 )
Continue
EndIf
// Note: doing bitwise comparison here...
If ((IntInd[xi] & Cind) != CInd)
xwave[xi] = Nan
ywave[xi] = Nan
EndIf
EndFor
AppendToGraph $(ConcFolder + ":ywave") vs $(ConcFolder + ":xwave")
ModifyGraph mode(ywave)=2
ModifyGraph rgb(ywave)=(0,0,0)
Else
// Remove points from graph if already there:
RemoveFromGraph/W=$s.winname/Z ywave
KillWaves $(ConcFolder + ":ywave"), $(ConcFolder + ":xwave")
EndIf
Break
// d or D pressed:
Case 100:
Case 68:
NVAR FitLine = root:Packages:VisualAge:Options:ConcordiaOption_FitLine
NVAR ThroughZero = root:Packages:VisualAge:Options:ConcordiaOption_ThroughZero
// Check if fit is already on the graph:
If (FindListItem("fit_yWave", TraceNameList(s.winname, ";", 1)) == -1)
// If not on the graph, add a fit:
FitLine = 1
If (s.eventMod == 2)
// If shift is down, force through zero:
ThroughZero = 1
ConcordiaFitLine(ConcVersion, ConcInteg, doTW, anchor=1)
Else
// Otherwise, do a free fit:
ThroughZero = 0
ConcordiaFitLine(ConcVersion, ConcInteg, doTW)
EndIf
Else
// If a fit is already on the graph, remove it:
FitLine = 0
RemoveFromGraph/W=$s.winname/Z fit_yWave
TextBox/K/N=InterceptAgeText
EndIf
Break
// c pressed:
Case 99:
NVAR DoConcAge = root:Packages:VisualAge:Options:ConcordiaOption_ShowConcAge
// Check if ConcAge is already on the graph:
If (FindListItem("WtdMeany", TraceNameList(s.winname, ";", 1)) == -1)
// If not, calculate + add:
DoConcAge = 1
CalculateConcAge(ConcVersion, ConcInteg, ConcFolder=ConcFolder, AddToPlot=1, AddAnnotation=1, doTW=doTW)
Else
// If yes, remove it:
DoConcAge = 0
RemoveFromGraph/W=$s.winname/Z WtdMeany
TextBox/K/N=ConcAgeText
EndIf
Break
EndSwitch
// Tell Igor we've handled the keypress event:
Return 1
// Graph modified event:
Case 8:
// Check if we want to delete integrations when they're removed from a diagram:
NVAR RemoveIntegrations = root:Packages:VisualAge:Options:ConcordiaOption_RemoveIntegs
If (!RemoveIntegrations)
Return 0
EndIf
// Determine if any waves have been removed:
String NewTraces = TraceNameList(s.winName,";",1)
String RemovedTraces = CurrentTraces
For (i = 0; i < ItemsInList(NewTraces); i = i + 1)
RemovedTraces=RemoveFromList(StringFromList(i, NewTraces), RemovedTraces)
EndFor
CurrentTraces = NewTraces
SetWindow $ConcName, userdata(CurrentTraces) = CurrentTraces
// Remove integrations:
For (i = 0; i < ItemsInList(RemovedTraces); i = i + 1)
// Integration traces are of the form "Int#y" where # is the integration number
String CurrentInt = StringFromList(i, RemovedTraces)
// Make sure it was an ellipse:
If (StrSearch(CurrentInt, "Int", 0) == -1)
Return 0
EndIf
// Extra the number from the string
Variable IntegNum = str2num(CurrentInt[3, strlen(CurrentInt)-2])
RemoveIntegrationByIndex(ConcInteg, IntegNum)
EndFor
// Replot integrations:
If ( ItemsInList(RemovedTraces) > 0)
// Remove all integration ellipses:
For (i=0; i < ItemsInList(NewTraces); i = i + 1)
String TraceToRemove = StringFromList(i, NewTraces)
If ( StrSearch(TraceToRemove, "Int", 0) != -1 )
RemoveFromGraph/Z $TraceToRemove
EndIf
EndFor
// Replot integrations:
For (i = 1; i <= NoOfIntegrations; i = i + 1)
String EllipseInfo = AddToConcordiaByIntegration(i, ConcVersion, ConcInteg, s.winName, doTW=doTW)
If ( str2num(StringByKey("ErrorIsBig", EllipseInfo)) == 1 || str2num(StringByKey("DiscPercentGreaterThanCutoff", EllipseInfo)) == 1 || str2num(StringByKey("DiscPercentLessThanCutoff", EllipseInfo)) == 1)
ModifyGraph hideTrace($StringByKey("Handle", EllipseInfo))=1
EndIf
CurrentTraces = TraceNameList(s.winName, ";", 1)
SetWindow $ConcName, userdata(CurrentTraces) = CurrentTraces
EndFor
// Recalculate ConcAge if desired:
NVAR DoConcAge = root:Packages:VisualAge:Options:ConcordiaOption_ShowConcAge
If ( DoConcAge )
CalculateConcAge(ConcVersion, ConcInteg, ConcFolder=ConcFolder, AddToPlot=1, AddAnnotation=1, doTW=doTW)
EndIf
// Recalculate the fit if desired:
NVAR FitLine = root:Packages:VisualAge:Options:ConcordiaOption_FitLine
If ( FitLine )
ConcordiaFitLine(ConcVersion, ConcInteg, doTW)
EndIf
EndIf
// Tell Igor we've handled the event:
Return 1
// Mouse moved event:
Case 4:
// Update the info annotation if desired:
NVAR ShowInfoOption = root:Packages:VisualAge:Options:ConcordiaOption_ShowInfo
If (ShowInfoOption)
// Determine which trace is closest to the mouse:
String ActiveTraceInfo = TraceFromPixel(s.mouseLoc.h, s.mouseLoc.v,"")
String ActiveTrace = StringByKey("TRACE", activeTraceInfo)
// If the trace isn't an ellipse then return:
If (StrSearch(ActiveTrace, "Int", 0) == -1)
Return 1
EndIf
// Determine the integration number of the trace:
Variable IntegrationNo = str2num(ActiveTrace[3, strlen(ActiveTrace)-2])
// Change ellipse color to indicate which is active:
ModifyGraph/Z rgb($PreviouslyActiveTrace)=(0,0,0)
ModifyGraph/Z rgb($ActiveTrace)=(65535,0,0)
PreviouslyActiveTrace = ActiveTrace
SetWindow $ConcName, userdata(PreviouslyActiveTrace) = PreviouslyActiveTrace
// Contruct annotation:
Wave/T IntLabels = $ioliteDFpath("integration", "IntegNoLabels")
String AgeStr = ConcVersion[0,4] + "Age" + ConcVersion[5,inf]
Variable a68, s68, a75, s75, a82, s82, a76, s76
Variable aavg, savg, asd2, asd3, asd4
Variable gval = 60000
String info = ""
Wave ResultWave = $MakeioliteWave("CurrentDRS", "ResultWave", n = 2)
// Get age and uncert for all uncorrected ages:
GetIntegrationFromIolite(AgeStr + "206_238", ConcInteg, IntegrationNo, "ResultWave")
a68 = ResultWave[0]
s68 = ResultWave[1]
GetIntegrationFromIolite(AgeStr + "207_235", ConcInteg, IntegrationNo, "ResultWave")
a75 = ResultWave[0]
s75 = ResultWave[1]
GetIntegrationFromIolite(AgeStr + "208_232", ConcInteg, IntegrationNo, "ResultWave")
a82 = ResultWave[0]
s82 = ResultWave[1]
GetIntegrationFromIolite(AgeStr + "207_206", ConcInteg, IntegrationNo, "ResultWave")
a76 = ResultWave[0]
s76 = ResultWave[1]
// Do some tests on ages + uncerts to color the ages according to how well they agree:
aavg = (a68+a75)/2
savg = sqrt(s68^2 + s75^2)
asd4 = sqrt( ( (a68-aavg)^2 + (a75-aavg)^2 + (a82-aavg)^2 + (a76-aavg)^2 )/4 )
asd3 = sqrt( ( (a68-aavg)^2 + (a75-aavg)^2 + (a82-aavg)^2 )/3 )
asd2 = sqrt( ( (a68-aavg)^2 + (a75-aavg)^2)/2)
If ( abs(a68-aavg) < (s68+savg) )
gval = 60000*(2/asd2)
If (gval > 60000)
gval = 60000
EndIf
Info += "\K(0," + num2str(gval) +",0)"
EndIf
info += "\f00\M\S206\MPb/\S238\MU Age = " + num2str(a68) + " ± " + num2str(s68)+ "\r\K(0,0,0)"
If ( abs(a75-aavg) < (s75+savg) )
gval = 60000*(2/asd2)
If (gval > 60000)
gval = 60000
EndIf
Info += "\K(0," + num2str(gval) +",0)"
EndIf
info += "\f00\M\S207\MPb/\S235\MU Age = " + num2str(a75) + " ± " + num2str(s75)+ "\r\K(0,0,0)"
If ( abs(a82-aavg) < (s82+savg))
gval = 60000*(2/asd3)
If (gval > 60000)
gval = 60000
EndIf
Info += "\K(0," + num2str(gval) +",0)"
aavg = (a68+a75+a82)/3
savg = sqrt(s68^2 + s75^2 + s82^2)
EndIf
info += "\f00\M\S208\MPb/\S232\MTh Age = " + num2str(a82) + " ± " + num2str(s82)+ "\r\K(0,0,0)"