Describe the feature request

After issue #26679 resolved, istiod can be configured to watch a subset of namespaces in a k8s cluster by using meshConfig.discoverySelectors. But for deploying multi-istio in a k8s cluster, there are still some gaps:

• namespace controller injects ConfigMap istio-root-ca-cert to namespaces, need to scoping it to the namespaces which are part of mesh managed by one Istio deployment, otherwise, it would override istio-root-ca-cert injected by another Istiod deployment.
• mutating/validating webhook should be configured to run on an object based on which Istio deployment manages its namespace.
• secrets controller watches all namespaces currently, it should also be configured to avoid trigger XDS push unnecessarily when a Secret doesn't belong to a Istio deployment. This is not mandatory, but better to have.

PR #29802 implemented a DiscoveryNamespacesFilter, which can be reused by namespace controller and secrets controller, but looks like a different set of namespace selectors should be defined, because "discovery - namespaces watched by Istio" and "namespaces in a mesh" are different concept.

Per my understanding, another namespace selector("meshNamespaceSelectors"?) in MeshConfig should be defined and items listed above should be modified accordingly. Please correct me if I misunderstand anything.

Describe alternatives you've considered

[ ] Docs
[ ] Installation
[X] Networking
[ ] Performance and Scalability
[ ] Extensions and Telemetry
[ ] Security
[ ] Test and Release
[ ] User Experience
[ ] Developer Infrastructure

[] Multi Cluster
[ ] Virtual Machine
[X] Multi Control Plane

Additional context