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Illumina

Illumina Open Source Software

Popular repositories

  1. hap.py hap.py Public

    Haplotype VCF comparison tools

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  2. manta manta Public archive

    Structural variant and indel caller for mapped sequencing data

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  3. SpliceAI SpliceAI Public

    A deep learning-based tool to identify splice variants

    Python 366 152

  4. strelka strelka Public

    Strelka2 germline and somatic small variant caller

    C++ 349 102

  5. ExpansionHunter ExpansionHunter Public

    A tool for estimating repeat sizes

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  6. Nirvana Nirvana Public

    The nimble & robust variant annotator

    C# 165 43

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