Error when trying out the reproducible example #9

JT85 · 2015-04-15T09:04:46Z

I've just installed the latest version of streamgraph (0.7) and get the following error.

ggplot2::movies %>%
select(year, Action, Animation, Comedy, Drama, Documentary, Romance, Short) %>%
tidyr::gather(genre, value, -year) %>%
group_by(year, genre) %>%
tally(wt=value) %>%
ungroup %>%
mutate(year=as.Date(sprintf("%d-01-01", year))) -> dat 

streamgraph(dat, "genre", "n", "year")

Error in expand_(data, dots) : object '.' not found

sessionInfo()
R version 3.1.0 (2014-04-10)
Platform: x86_64-unknown-linux-gnu (64-bit)

locale:
[1] LC_CTYPE=en_US.UTF-8       LC_NUMERIC=C               LC_TIME=en_US.UTF-8        LC_COLLATE=en_US.UTF-8     LC_MONETARY=en_US.UTF-8   
[6] LC_MESSAGES=en_US.UTF-8    LC_PAPER=en_US.UTF-8       LC_NAME=C                  LC_ADDRESS=C               LC_TELEPHONE=C            
[11] LC_MEASUREMENT=en_US.UTF-8 LC_IDENTIFICATION=C       

attached base packages:
[1] stats     graphics  grDevices utils     datasets  methods   base     

other attached packages:
[1] streamgraph_0.7   htmltools_0.2.6   htmlwidgets_0.3.2 dplyr_0.4.0      

loaded via a namespace (and not attached):
[1] assertthat_0.1     colorspace_1.2-4   DBI_0.3.1          dichromat_2.0-0    digest_0.6.4       ggplot2_1.0.0      grid_3.1.0         gtable_0.1.2      
 [9] labeling_0.2       lattice_0.20-29    lazyeval_0.1.10    magrittr_1.0.1     MASS_7.3-31        munsell_0.4.2      parallel_3.1.0     plyr_1.8.1        
[17] proto_0.3-10       RColorBrewer_1.0-5 Rcpp_0.11.3        reshape2_1.2.2     RJSONIO_1.0-3      scales_0.2.3       stringr_0.6.2      tidyr_0.2.0       
[25] tools_3.1.0        xts_0.9-7          zoo_1.7-10

The text was updated successfully, but these errors were encountered:

hrbrmstr · 2015-04-15T10:11:19Z

Looks like you missed a library(dplyr)

JT85 · 2015-04-15T12:12:42Z

No. Look at the sessionInfo(). It contains dplyr_0.4.0.

hrbrmstr · 2015-04-15T12:18:38Z

That's because streamgraph imports from it. Just tried the full first example (all library calls intact) in an R instance that did not have streamgraph installed and it worked without an issue:

devtools::install_github("hrbrmstr/streamgraph")

library(streamgraph)
library(dplyr)

ggplot2::movies %>%
  select(year, Action, Animation, Comedy, Drama, Documentary, Romance, Short) %>%
  tidyr::gather(genre, value, -year) %>%
  group_by(year, genre) %>%
  tally(wt=value) -> dat

streamgraph(dat, "genre", "n", "year", interactive=TRUE) %>%
  sg_axis_x(20, "year", "%Y") %>%
  sg_fill_brewer("PuOr")

Does:

data <- read.csv("http://bl.ocks.org/WillTurman/raw/4631136/data.csv", stringsAsFactors=FALSE)
data$date <- as.Date(data$date, format="%m/%d/%y")

streamgraph(data, interactive=TRUE) %>% sg_colors("Reds")

work? If so, it's almost certainly a missing library(dplyr) on your part.

jpmarindiaz · 2015-08-07T00:08:30Z

@hrbrmstr I am having some unexpected behavior with the example.
The values in the top left do not change when I move de mouse around, it shows a fixed value for each category, any ideas?

hrbrmstr · 2015-08-07T00:42:23Z

Which example in particular (can you paste the exact code you are using)?

jpmarindiaz · 2015-08-07T01:01:01Z

sorry, it is not working for me at all... not even with the basic example:

library(streamgraph)
library(dplyr)

ggplot2::movies %>%
  select(year, Action, Animation, Comedy, Drama, Documentary, Romance, Short) %>%
  tidyr::gather(genre, value, -year) %>%
  group_by(year, genre) %>%
  tally(wt=value) -> dat

streamgraph(dat, "genre", "n", "year", interactive=TRUE) %>%
  sg_axis_x(20, "year", "%Y") %>%
  sg_fill_brewer("PuOr")

hrbrmstr · 2015-08-07T01:26:31Z

can you paste the output of devtools::session_info()? It's working for a
ton of people and I just tried it from the github version on a vanilla
install.

On Thu, Aug 6, 2015 at 9:01 PM, jpmarindiaz notifications@github.com
wrote:

sorry, it is not working for me at all... not even with the basic example:

library(streamgraph)
library(dplyr)

ggplot2::movies %>%
select(year, Action, Animation, Comedy, Drama, Documentary, Romance, Short) %>%
tidyr::gather(genre, value, -year) %>%
group_by(year, genre) %>%
tally(wt=value) -> dat

streamgraph(dat, "genre", "n", "year", interactive=TRUE) %>%
sg_axis_x(20, "year", "%Y") %>%
sg_fill_brewer("PuOr")

—
Reply to this email directly or view it on GitHub
#9 (comment).

jpmarindiaz · 2015-08-07T01:36:40Z

that's weird

Session info ---------------------------------------------------------------------------
 setting  value                       
 version  R version 3.2.1 (2015-06-18)
 system   x86_64, darwin13.4.0        
 ui       RStudio (0.99.467)          
 language (EN)                        
 collate  en_US.UTF-8                 
 tz       America/Bogota              

Packages -------------------------------------------------------------------------------
 package      * version    date       source                                   
 assertthat     0.1        2013-12-06 CRAN (R 3.2.0)                           
 colorspace     1.2-6      2015-03-11 CRAN (R 3.2.0)                           
 curl           0.9.1      2015-07-04 CRAN (R 3.2.0)                           
 DBI            0.3.1      2014-09-24 CRAN (R 3.2.0)                           
 devtools     * 1.8.0      2015-05-09 CRAN (R 3.2.0)                           
 digest         0.6.8      2014-12-31 CRAN (R 3.2.0)                           
 dplyr        * 0.4.2      2015-06-16 CRAN (R 3.2.0)                           
 DT           * 0.1        2015-06-09 CRAN (R 3.2.0)                           
 dygraphs     * 0.4.5      2015-06-11 CRAN (R 3.2.0)                           
 ggplot2      * 1.0.1      2015-03-17 CRAN (R 3.2.0)                           
 git2r          0.10.1     2015-05-07 CRAN (R 3.2.0)                           
 gridExtra      2.0.0      2015-07-14 CRAN (R 3.2.0)                           
 gtable         0.1.2      2012-12-05 CRAN (R 3.2.0)                           
 htmltools    * 0.2.6      2014-09-08 CRAN (R 3.2.0)                           
 htmlwidgets  * 0.5        2015-06-21 CRAN (R 3.2.0)                           
 jsonlite       0.9.16     2015-04-11 CRAN (R 3.2.0)                           
 lattice        0.20-31    2015-03-30 CRAN (R 3.2.1)                           
 lazyeval       0.1.10     2015-01-02 CRAN (R 3.2.0)                           
 leaflet      * 1.0.0.9999 2015-08-07 Github (rstudio/leaflet@451fc78)         
 magrittr       1.5        2014-11-22 CRAN (R 3.2.0)                           
 MASS           7.3-40     2015-03-21 CRAN (R 3.2.1)                           
 memoise        0.2.1      2014-04-22 CRAN (R 3.2.0)                           
 munsell        0.4.2      2013-07-11 CRAN (R 3.2.0)                           
 plyr         * 1.8.3      2015-06-12 CRAN (R 3.2.0)                           
 proto          0.3-10     2012-12-22 CRAN (R 3.2.0)                           
 R6             2.1.0      2015-07-04 CRAN (R 3.2.1)                           
 rcdimple     * 0.1        2015-07-28 Github (timelyportfolio/rcdimple@e91c020)
 RColorBrewer * 1.1-2      2014-12-07 CRAN (R 3.2.0)                           
 Rcpp           0.12.0     2015-07-25 CRAN (R 3.2.0)                           
 reshape2     * 1.4.1      2014-12-06 CRAN (R 3.2.0)                           
 rgdal        * 1.0-4      2015-06-23 CRAN (R 3.2.0)                           
 roxygen2       4.1.1      2015-04-15 CRAN (R 3.2.0)                           
 rstudioapi     0.3.1      2015-04-07 CRAN (R 3.2.0)                           
 rversions      1.0.2      2015-07-13 CRAN (R 3.2.0)                           
 scales       * 0.2.5      2015-06-12 CRAN (R 3.2.0)                           
 sp           * 1.1-1      2015-06-05 CRAN (R 3.2.0)                           
 streamgraph  * 0.7        2015-08-07 Github (hrbrmstr/streamgraph@e84109a)    
 stringi        0.5-5      2015-06-29 CRAN (R 3.2.0)                           
 stringr        1.0.0      2015-04-30 CRAN (R 3.2.0)                           
 tidyr        * 0.2.0      2014-12-05 CRAN (R 3.2.0)                           
 waffle       * 0.3.1      2015-03-23 CRAN (R 3.2.0)                           
 whisker      * 0.3-2      2013-04-28 CRAN (R 3.2.0)                           
 xml2           0.1.1      2015-06-02 CRAN (R 3.2.0)                           
 xts          * 0.9-7      2014-01-02 CRAN (R 3.2.0)                           
 yaml         * 2.1.13     2014-06-12 CRAN (R 3.2.0)                           
 zoo          * 1.7-12     2015-03-16 CRAN (R 3.2.0)

hrbrmstr · 2015-08-07T16:48:23Z

try devtools::install_github("hrbrmstr/streamgraph@dev"), restart R and try the example again (pls)

jpmarindiaz · 2015-08-08T23:52:00Z

Thanks, it is working!

But now, when I try to pass the names of the columns as variables I get an error:

library(streamgraph)
# current verison
packageVersion("streamgraph")

library(dplyr)
ggplot2::movies %>%
  select(year, Action, Animation, Comedy, Drama, Documentary, Romance, Short) %>%
  tidyr::gather(genre, value, -year) %>%
  group_by(year, genre) %>%
  tally(wt=value) -> dat

streamgraph(dat, "genre", "n", "year", interactive=TRUE) %>%
  sg_axis_x(20, "year", "%Y") %>%
  sg_fill_brewer("PuOr")
# OK

y <- names(dat)[1]
streamgraph(dat, "genre", "n", y, interactive=TRUE) %>%
  sg_axis_x(20, "year", "%Y") %>%
  sg_fill_brewer("PuOr")
# ERROR
# Error in `[.data.frame`(data, , c(key, value, date)) :
#   undefined columns selected

ShawnyTan · 2017-02-27T18:15:40Z

@hrbrmstr Thanks for this fantastic resource. I got a problem when I tried this example:
`library(dplyr)
library(babynames)
library(streamgraph)

babynames %>%
filter(grepl("^Kr", name)) %>%
group_by(year, name) %>%
tally(wt=n) %>%
streamgraph("name", "n", "year")`

The error I got is
Error in [.data.frame(data, , c(key, value, date)) :
undefined columns selected

You have any idea about this? Thanks!

hrbrmstr · 2017-02-27T18:25:12Z

ah, yes. `tally()` changed behaviour. make it `streamgraph("name", "nn", "year")`. I'll get the example updated.

…

On Mon, Feb 27, 2017 at 1:15 PM, ShawnyTan ***@***.***> wrote: @hrbrmstr <https://github.com/hrbrmstr> Thanks for this fantastic resource. I got a problem when I tried this example: `library(dplyr) library(babynames) library(streamgraph) babynames %>% filter(grepl("^Kr", name)) %>% group_by(year, name) %>% tally(wt=n) %>% streamgraph("name", "n", "year")` The error I got is Error in [.data.frame(data, , c(key, value, date)) : undefined columns selected You have any idea about this? Thanks! — You are receiving this because you were mentioned. Reply to this email directly, view it on GitHub <#9 (comment)>, or mute the thread <https://github.com/notifications/unsubscribe-auth/AAfHttIJ0a35cEARfy6JhzvSGgZMSBT3ks5rgxLMgaJpZM4EA6x5> .

ShawnyTan · 2017-02-27T18:29:59Z

Oh it works! Thanks a lot! But I don't quite understand the error. How do I generalize this adaption to my case?

ShawnyTan · 2017-02-27T18:47:49Z

I got it. Just do streamgraph(dat,"X","n","Y")
Thanks!

hrbrmstr · 2017-02-27T19:12:24Z

aye. tally() won't overwrite n it just keeps adding n's to n column names.

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Error when trying out the reproducible example #9

Error when trying out the reproducible example #9

JT85 commented Apr 15, 2015

hrbrmstr commented Apr 15, 2015

JT85 commented Apr 15, 2015

hrbrmstr commented Apr 15, 2015

jpmarindiaz commented Aug 7, 2015

hrbrmstr commented Aug 7, 2015

jpmarindiaz commented Aug 7, 2015

hrbrmstr commented Aug 7, 2015

jpmarindiaz commented Aug 7, 2015

hrbrmstr commented Aug 7, 2015

jpmarindiaz commented Aug 8, 2015

ShawnyTan commented Feb 27, 2017

hrbrmstr commented Feb 27, 2017 via email

ShawnyTan commented Feb 27, 2017

ShawnyTan commented Feb 27, 2017

hrbrmstr commented Feb 27, 2017

Error when trying out the reproducible example #9

Error when trying out the reproducible example #9

Comments

JT85 commented Apr 15, 2015

hrbrmstr commented Apr 15, 2015

JT85 commented Apr 15, 2015

hrbrmstr commented Apr 15, 2015

jpmarindiaz commented Aug 7, 2015

hrbrmstr commented Aug 7, 2015

jpmarindiaz commented Aug 7, 2015

hrbrmstr commented Aug 7, 2015

jpmarindiaz commented Aug 7, 2015

hrbrmstr commented Aug 7, 2015

jpmarindiaz commented Aug 8, 2015

ShawnyTan commented Feb 27, 2017

hrbrmstr commented Feb 27, 2017 via email

ShawnyTan commented Feb 27, 2017

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hrbrmstr commented Feb 27, 2017