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Request for guidance on generating fastfold training cache files #190

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morou34 opened this issue Mar 4, 2024 · 1 comment
Open

Request for guidance on generating fastfold training cache files #190

morou34 opened this issue Mar 4, 2024 · 1 comment

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@morou34
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morou34 commented Mar 4, 2024

Hi ;
I am in the process of setting up FastFold for training and encountered a requirement for 2specific cache files: mmcif_cache.json and chain_data_cache.json. These files appear to be essential for filtering templates by release dates and managing chain-level data during the training process. Could anyone provide guidance or scripts on how to generate these cache files?

@mouaadAI
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mouaadAI commented Apr 2, 2024

if anyone has the same question here is the solution: https://github.com/aqlaboratory/openfold/tree/main/scripts
use openfold scripts to generate the cache files.

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