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How should the missing genotypes be encoded? #9

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GouXiangJian opened this issue Dec 27, 2022 · 0 comments
Open

How should the missing genotypes be encoded? #9

GouXiangJian opened this issue Dec 27, 2022 · 0 comments

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@GouXiangJian
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Hi Prof. Hae Kyung Im,

I can understand that in the genotype file (geuvadis.snps.dosage.txt) 0 represents the reference genotype, 1 represents the heterozygous genotype, and 2 represents the mutant genotype. However, in addition to the above three genotypes, my genotype file also contains missing genotypes (NN). How should the missing genotypes be encoded?
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