/usr/local/bin/run_segalign: line 60: segalign: command not found

[osyafinkelberg]

Dear Sneha,

I have the same issue as in #51. And I was not able to find a solution.

When I am running

run_segalign --help

as was suggested in #51, I receive the following error:
/usr/local/bin/run_segalign: line 60: segalign: command not found

Thank you very much!

[richard-burhans]

If you use conda, you can install SegAlign using my bioconda recipe. You would use a command like the following:

conda create --name segalign --channel conda-forge --channel bioconda --channel defaults --override-channels --strict-channel-priority --solver libmamba --yes segalign-full