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binary-id.html
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binary-id.html
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<!DOCTYPE html>
<html lang="en">
<head>
<meta http-equiv="content-type" content="text/html; charset=UTF-8">
<meta charset="utf-8">
<!--- Change the title of the webpage in the <title> tag -->
<title>Microbe-ID | Genotype-ID: MLST Analysis</title>
<meta name="viewport" content="width=device-width, initial-scale=1.0">
<meta name="description" content="">
<meta name="author" content="root">
<!-- Le styles, make sure that the Bootstrap_files folder is in the same directory than your homepage -->
<link href="Bootstrap_files/bootstrap.css" rel="stylesheet">
<link href="Bootstrap_files/phytophthora-lab.css" rel="stylesheet">
<style>
/* Sticky footer styles
-------------------------------------------------- */
html,
body {
height: 100%;
/* The html and body elements cannot have any padding or margin. */
}
/* Wrapper for page content to push down footer */
#wrap {
min-height: 95%;
height: auto !important;
height: 95%;
/* Negative indent footer by it's height */
margin: 0 auto -70px;
}
/* Set the fixed height of the footer here */
#push,
#footer {
height: 120px;
}
#footer {
background-color: #f5f5f5;
}
/* Lastly, apply responsive CSS fixes as necessary */
@media (max-width: 767px) {
#footer {
margin-left: -20px;
margin-right: -20px;
padding-left: 20px;
padding-right: 20px;
}
}
#wrap > .container {
padding-top: 60px;
}
.container .credit {
margin: 20px 0;
}
code {
font-size: 80%;
}
.holds-the-iframe {
background-color:transparent;
background:url(img/loading.gif) top center no-repeat;
}
</style>
<head>
<!-- Recalling stylesheets and icons. Once again, make sure that the Bootstrap_files folder is in the same directory than your homepage -->
<link rel="stylesheet" type="text/css" href="shared/shiny.css" />
<link href="Bootstrap_files/bootstrap-responsive.css" rel="stylesheet">
<link rel="stylesheet" type="text/css" href="shared/shiny.css" />
<!-- HTML5 shim, for IE6-8 support of HTML5 elements -->
<!--[if lt IE 9]>
<script src="../assets/js/html5shiv.js"></script>
<![endif]-->
<!-- Fav and touch icons -->
<link rel="apple-touch-icon-precomposed" sizes="144x144" href="http://twitter.github.com/bootstrap/assets/ico/apple-touch-icon-144-precomposed.png">
<link rel="apple-touch-icon-precomposed" sizes="114x114" href="http://twitter.github.com/bootstrap/assets/ico/apple-touch-icon-114-precomposed.png">
<link rel="apple-touch-icon-precomposed" sizes="72x72" href="http://twitter.github.com/bootstrap/assets/ico/apple-touch-icon-72-precomposed.png">
<link rel="apple-touch-icon-precomposed" href="http://twitter.github.com/bootstrap/assets/ico/apple-touch-icon-57-precomposed.png">
<link rel="shortcut icon" href="img/customIcon.png">
</head>
<body>
<div id="wrap">
<div class="navbar navbar-inverse navbar-fixed-top">
<div class="navbar-inner">
<div class="container">
<button type="button" class="btn btn-navbar" data-toggle="collapse" data-target=".nav-collapse">
<span class="icon-bar"></span>
<span class="icon-bar"></span>
<span class="icon-bar"></span>
</button>
<!-- Names of the links are between the <a></a> tags. -->
<a class="brand" href="./index.html">Microbe-ID</a>
<div class="nav-collapse collapse">
<ul class="nav">
<li class="./index.html"><a href="./index.html">Home</a></li>
<li><a href="./seq-id.html">Sequence-ID</a></li>
<li><a href="./geno-id.html">Genotype-ID</a></li>
<li><a href="./about.html">About</a></li>
</ul>
</div>
</div>
</div>
</div>
<div class="container">
<!-- MICROBE_ID specific: The following division contains the Shiny-Server instance that you
installed according to the shiny server manual. Change the text, modify the links, and
point the hyperlinks here!. -->
<h1>Genotype-ID</h1>
<p>Choose a tab to select the type of data and analysis.</p>
<!-- Tabs and Dropdowns -->
<ul class="nav nav-tabs">
<li><a href="./geno-id.html">SSR/Microsatellite data</a></li>
<li><a href="./MLST.html">MLST data</a></li>
<li class="active"><a href="./binary-id.html">Binary (AFLP) data</a></li>
</ul>
<h2> AFLP analysis for
<em>Aphanomyces euteiches</em>
</h2>
<p>Paste and submit AFLP data (see reference files for format), and then choose a tab for a distance tree analysis or a minimum spanning network.</p>
<hr>
<div class="holds-the-iframe">
<!-- MICROBE_ID specific: IMPORTANT!!! Add the hyperlink to the app in the iframe (after the src= tag) -->
<iframe style="border:0;width:100%; height:1800px" name="shinyid_frame" src="http://oomy.cgrb.oregonstate.edu:3838/grunwald/Binary-ID/" scrolling="no"></iframe>
<script>iFrameResize({log:false})</script>
</div>
</div>
<div id="push"></div>
</div>
<div id="footer">
<div class="container">
<br>
<p>Add content here</p>
</div>
<!-- Le javascript
================================================== -->
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<script src="Bootstrap_files/bootstrap-transition.js"></script>
<script src="Bootstrap_files/bootstrap-alert.js"></script>
<script src="Bootstrap_files/bootstrap-modal.js"></script>
<script src="Bootstrap_files/bootstrap-dropdown.js"></script>
<script src="Bootstrap_files/bootstrap-scrollspy.js"></script>
<script src="Bootstrap_files/bootstrap-tab.js"></script>
<script src="Bootstrap_files/bootstrap-tooltip.js"></script>
<script src="Bootstrap_files/bootstrap-popover.js"></script>
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<script src="Bootstrap_files/bootstrap-collapse.js"></script>
<script src="Bootstrap_files/bootstrap-carousel.js"></script>
<script src="Bootstrap_files/bootstrap-typeahead.js"></script>
<script src="Bootstrap_files/jquery.js" type="text/javascript"></script>
<script src="Bootstrap_files/shiny.js" type="text/javascript"></script>
<script src="http://cdn.sockjs.org/sockjs-0.3.min.js"></script>
<script>
if (typeof(Shiny) != "undefined") {
Shiny.createSocket = function() {
return new SockJS(location.pathname + "__sockjs__", null, {});
};
Shiny.oncustommessage = function(message) {
if (typeof message === "string") alert(message);
if (message.alert) alert(message.alert);
if (message.console && console.log) console.log(message.console);
};
}
</script>
</body>
</html>