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Upgrade Pandas to 0.24 #100

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gwaybio opened this issue Apr 4, 2019 · 0 comments

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gwaybio commented Apr 4, 2019

As mentioned by @blankenberg in #98

An upgrade to pandas 0.24.0+ will give 'infer' option for compression in to_csv() which is now currently being worked around for gzip outputs. Pandas currently pinned at 0.23.0 in environment.yml

See pandas release notes and pandas-dev/pandas#15008 (also shoutout to @dhimmel 🎉 )

This will be a helpful addition that will require some additional modifications.

gwaybio mentioned this issue

First pass at parameterizing script inputs used in tp53_analysis.sh #98

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