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CMakeLists.txt
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CMakeLists.txt
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cmake_minimum_required(VERSION 3.17)
cmake_policy(VERSION 3.17)
project(goma)
enable_language(C)
enable_language(CXX)
enable_language(Fortran)
set(CMAKE_C_STANDARD 11)
set(CMAKE_CXX_STANDARD 14)
set(CMAKE_CXX_EXTENSIONS OFF)
list(APPEND CMAKE_MODULE_PATH "${goma_SOURCE_DIR}/cmake")
set(CMAKE_PREFIX_PATH ${Trilinos_PREFIX} ${CMAKE_PREFIX_PATH})
# Get Trilinos as one entity
message(STATUS "Trilinos_DIR = ${Trilinos_DIR}")
find_package(Trilinos REQUIRED)
# message(STATUS "Trilinos LD Flags = ${Trilinos_EXTRA_LD_FLAGS}")
set(MPI_C_COMPILER ${Trilinos_C_COMPILER})
set(MPI_CXX_COMPILER ${Trilinos_CXX_COMPILER})
set(MPI_Fortran_COMPILER ${Trilinos_Fortran_COMPILER})
message(STATUS "MPI_C_COMPILER: ${MPI_C_COMPILER}")
message(STATUS "MPI_CXX_COMPILER: ${MPI_CXX_COMPILER}")
message(STATUS "MPI_Fortran_COMPILER: ${MPI_Fortran_COMPILER}")
find_package(MPI REQUIRED)
# Avoid linking to too many libraries by removing duplicates reverse so that
# correct order for linking is preserved
list(REVERSE Trilinos_LIBRARIES)
list(REMOVE_DUPLICATES Trilinos_LIBRARIES)
list(REVERSE Trilinos_LIBRARIES)
#
list(REVERSE Trilinos_TPL_LIBRARIES)
list(REMOVE_DUPLICATES Trilinos_TPL_LIBRARIES)
list(REVERSE Trilinos_TPL_LIBRARIES)
if(NOT GOMA_COMPILER_OVERRIDE)
set(CMAKE_CXX_COMPILER ${Trilinos_CXX_COMPILER})
set(CMAKE_C_COMPILER ${Trilinos_C_COMPILER})
set(CMAKE_Fortran_COMPILER ${Trilinos_Fortran_COMPILER})
else()
if(NOT (${CMAKE_C_COMPILER} STREQUAL ${Trilinos_C_COMPILER}))
message(
WARNING
"CMAKE_C_COMPILER ${CMAKE_C_COMPILER} different from Trilinos_C_COMPILER ${Trilinos_C_COMPILER}"
)
message(WARNING "force setting compiler with GOMA_COMPILER_OVERRIDE=OFF")
endif()
if(NOT (${CMAKE_CXX_COMPILER} STREQUAL ${Trilinos_CXX_COMPILER}))
message(
WARNING
"CMAKE_CXX_COMPILER ${CMAKE_CXX_COMPILER} different from Trilinos_CXX_COMPILER ${Trilinos_CXX_COMPILER}"
)
message(WARNING "force setting compiler with GOMA_COMPILER_OVERRIDE=OFF")
endif()
if(NOT (${CMAKE_Fortran_COMPILER} STREQUAL ${Trilinos_Fortran_COMPILER}))
message(
WARNING
"CMAKE_Fortran_COMPILER ${CMAKE_Fortran_COMPILER} different from Trilinos_Fortran_COMPILER ${Trilinos_Fortran_COMPILER}"
)
message(WARNING "force setting compiler with GOMA_COMPILER_OVERRIDE=OFF")
endif()
endif()
option(GOMA_MATRIX_GO_LONG_LONG OFF)
if(GOMA_MATRIX_GO_LONG_LONG)
list(APPEND GOMA_COMPILE_DEFINITIONS GOMA_MATRIX_GO_LONG_LONG)
endif()
option(ENABLE_CCACHE OFF)
if(ENABLE_CCACHE)
message(STATUS "Searching for ccache.")
find_program(CCACHE_FOUND ccache)
if(CCACHE_FOUND)
message(STATUS "Ccache found.")
set_property(GLOBAL PROPERTY RULE_LAUNCH_COMPILE ccache)
set_property(GLOBAL PROPERTY RULE_LAUNCH_LINK ccache)
endif(CCACHE_FOUND)
endif()
set(GOMA_COMPILER_OVERRIDE
OFF
CACHE
BOOL
"allow goma to compile with different compilers than TPLs, use with caution"
)
# Trilinos required packages
foreach(package Amesos AztecOO Epetra)
list(FIND Trilinos_PACKAGE_LIST ${package} trilinos_package_index)
if(${trilinos_package_index} LESS 0)
message(FATAL_ERROR "Trilinos not built with ${package} a required package")
endif()
endforeach()
# stratimikos and teko
list(FIND Trilinos_PACKAGE_LIST Stratimikos stratimikos_package_index)
if(${stratimikos_package_index} GREATER_EQUAL 0)
option(ENABLE_STRATIMIKOS "ENABLE_STRATIMIKOS" ON)
if(ENABLE_STRATIMIKOS)
message(STATUS "TRILINOS: Stratimikos found, enabling in Goma")
list(APPEND GOMA_COMPILE_DEFINITIONS GOMA_ENABLE_STRATIMIKOS)
list(FIND Trilinos_PACKAGE_LIST Teko teko_package_index)
if(${teko_package_index} GREATER_EQUAL 0)
option(ENABLE_TEKO "ENABLE_TEKO" ON)
if(ENABLE_TEKO)
message(STATUS "TRILINOS: Teko found, enabling in Goma")
list(APPEND GOMA_COMPILE_DEFINITIONS GOMA_ENABLE_TEKO)
endif()
endif()
endif()
endif()
if(${Trilinos_VERSION} VERSION_LESS 14.0.0)
message(WARNING "Trilinos version less than 14.0.0, Tpetra not supported")
else()
list(FIND Trilinos_PACKAGE_LIST Tpetra tpetra_package_index)
if(${tpetra_package_index} GREATER_EQUAL 0)
option(ENABLE_TPETRA "ENABLE_TPETRA" ON)
if((NOT ${HAVE_TPETRA_INST_INT_INT}) AND (NOT ${GOMA_MATRIX_GO_LONG_LONG}))
message(
WARNING
"Trilinos not built with Tpetra with int int, enable GOMA_MATRIX_GO_LONG_LONG (experimental), or rebuild Trilinos with Tpetra int int"
)
set(ENABLE_TPETRA OFF)
endif()
if(ENABLE_TPETRA)
option(GOMA_MATRIX_GO_LONG_LONG "GOMA_MATRIX_GO_LONG_LONG" OFF)
if(GOMA_MATRIX_GO_LONG_LONG)
message(
WARNING
"GOMA_MATRIX_GO_LONG_LONG is enabled, using long long for Tpetra this is experimental"
)
list(APPEND GOMA_COMPILE_DEFINITIONS GOMA_MATRIX_GO_LONG_LONG)
endif()
message(STATUS "TRILINOS: Tpetra found, enabling in Goma")
list(APPEND GOMA_COMPILE_DEFINITIONS GOMA_ENABLE_TPETRA)
list(FIND Trilinos_PACKAGE_LIST Amesos2 amesos2_package_index)
if(${amesos2_package_index} GREATER_EQUAL 0)
option(ENABLE_AMESOS2 "ENABLE_AMESOS2" ON)
if(ENABLE_AMESOS2)
message(STATUS "TRILINOS: Amesos2 found, enabling in Goma")
list(APPEND GOMA_COMPILE_DEFINITIONS GOMA_ENABLE_AMESOS2)
endif()
endif()
endif()
endif()
endif()
list(FIND Trilinos_PACKAGE_LIST Epetra epetra_package_index)
if(${epetra_package_index} GREATER_EQUAL 0)
option(ENABLE_EPETRA "ENABLE_EPETRA" ON)
if(ENABLE_EPETRA)
message(STATUS "TRILINOS: Epetra found, enabling in Goma")
list(APPEND GOMA_COMPILE_DEFINITIONS GOMA_ENABLE_EPETRA)
endif()
endif()
# Exodus
find_package(SEACASExodus REQUIRED HINTS ${Trilinos_DIR}/../SEACASExodus)
message(STATUS "SEACASExodus_DIR = ${SEACASExodus_DIR}")
option(ENABLE_APREPRO_LIB "ENABLE_APREPRO_LIB" ON)
if(ENABLE_APREPRO_LIB)
find_package(SEACASAprepro_lib HINTS ${SEACASExodus_DIR}/../SEACASAprepro_lib)
if(SEACASAprepro_lib_FOUND)
message(STATUS "Aprepro Library found, enabling")
message(STATUS "SEACASAprepro_lib_DIR = ${SEACASAprepro_lib_DIR}")
endif()
endif()
message(STATUS "PETSC_DIR = $ENV{PETSC_DIR}")
option(ENABLE_PETSC "ENABLE_PETSC" ON)
if(ENABLE_PETSC)
# PETSC search set root of location to find PETSc configuration
set(PETSC_PATH $ENV{PETSC_DIR}/$ENV{PETSC_ARCH})
set(ENV{PKG_CONFIG_PATH} ${PETSC_PATH}/lib/pkgconfig)
find_package(PkgConfig)
if(PkgConfig_FOUND)
pkg_search_module(PETSC IMPORTED_TARGET PETSc)
# Determine PETSc compilers
if(PETSC_FOUND)
execute_process(
COMMAND ${PKG_CONFIG_EXECUTABLE} PETSc --variable=prefix
COMMAND tr -d '\n'
OUTPUT_VARIABLE PETSC_PREFIX)
message(STATUS "Using PETSc prefix ${PETSC_PREFIX}")
execute_process(
COMMAND ${PKG_CONFIG_EXECUTABLE} PETSc --variable=ccompiler
COMMAND tr -d '\n'
OUTPUT_VARIABLE PETSC_C_COMPILER)
execute_process(
COMMAND ${PKG_CONFIG_EXECUTABLE} PETSc --variable=cxxcompiler
COMMAND tr -d '\n'
OUTPUT_VARIABLE PETSC_CXX_COMPILER)
execute_process(
COMMAND ${PKG_CONFIG_EXECUTABLE} PETSc --variable=fcompiler
COMMAND tr -d '\n'
OUTPUT_VARIABLE PETSC_FORTRAN_COMPILER)
if(ENABLE_PETSC)
if(NOT (Trilinos_C_COMPILER STREQUAL PETSC_C_COMPILER))
if(GOMA_COMPILER_OVERRIDE)
message(
WARNING "Trilinos and Petsc compiled with different C compilers\n"
"Trilinos C: ${Trilinos_C_COMPILER}\n"
"PETSc C: ${PETSC_C_COMPILER}")
else()
message(
FATAL_ERROR
"Trilinos and Petsc compiled with different C compilers\n"
"Trilinos C: ${Trilinos_C_COMPILER}\n"
"PETSc C: ${PETSC_C_COMPILER}"
"Disable error by GOMA_COMPILER_OVERRIDE=ON if you know what you are doing"
)
endif()
endif()
if(NOT (Trilinos_Fortran_COMPILER STREQUAL PETSC_FORTRAN_COMPILER))
if(GOMA_COMPILER_OVERRIDE)
message(
WARNING
"Trilinos and Petsc compiled with different Fortran compilers\n"
"Trilinos Fortran: ${Trilinos_Fortran_COMPILER}\n"
"PETSc Fortran: ${PETSC_FORTRAN_COMPILER}")
else()
message(
FATAL_ERROR
"Trilinos and Petsc compiled with different Fortran compilers\n"
"Trilinos Fortran: ${Trilinos_Fortran_COMPILER}\n"
"PETSc Fortran: ${PETSC_FORTRAN_COMPILER}"
"Disable error by GOMA_COMPILER_OVERRIDE=ON if you know what you are doing"
)
endif()
endif()
if(NOT (Trilinos_CXX_COMPILER STREQUAL PETSC_CXX_COMPILER))
if(GOMA_COMPILER_OVERRIDE)
message(
WARNING
"Trilinos and Petsc compiled with different CXX compilers\n"
"Trilinos CXX: ${Trilinos_CXX_COMPILER}\n"
"PETSc CXX: ${PETSC_CXX_COMPILER}")
else()
message(
FATAL_ERROR
"Trilinos and Petsc compiled with different CXX compilers\n"
"Trilinos CXX: ${Trilinos_CXX_COMPILER}\n"
"PETSc CXX: ${PETSC_CXX_COMPILER}"
"Disable error by GOMA_COMPILER_OVERRIDE=ON if you know what you are doing"
)
endif()
endif()
endif()
endif()
# For some reason this causes a lot of issues
list(APPEND GOMA_COMPILE_DEFINITIONS PETSC_SKIP_ATTRIBUTE_MPI_TYPE_TAG)
else()
message(WARNING "pkg-config not found, not searching for PETSc")
endif()
else()
message(STATUS "PETSc is disabled")
endif()
set(GOMA_TPL_LIBRARIES "")
set(GOMA_TPL_LIBRARIES "")
option(ENABLE_ARPACK "ENABLE_ARPACK" ON)
if(ENABLE_ARPACK)
set(ARPACK_PREFIX
"${Trilinos_DIR}/../../../"
CACHE PATH "set ARPACK library location")
find_package(ARPACK)
if(ARPACK_FOUND)
message(STATUS "Using ARPACK ${ARPACK_LIBRARIES}")
set(GOMA_TPL_LIBRARIES ${GOMA_TPL_LIBRARIES} ${ARPACK_LIBRARIES})
else()
message(STATUS "ARPACK library not found")
endif()
else()
message(STATUS "ARPACK library disabled")
endif()
option(ENABLE_SPARSE "ENABLE_SPARSE" ON)
if(ENABLE_SPARSE)
set(Sparse_PREFIX
"${Trilinos_DIR}/../../../"
CACHE PATH "set sparse library location")
find_package(Sparse)
if(Sparse_FOUND)
message(STATUS "Using Sparse ${Sparse_LIBRARIES}")
set(GOMA_TPL_LIBRARIES ${GOMA_TPL_LIBRARIES} ${Sparse_LIBRARIES})
list(APPEND GOMA_COMPILE_DEFINITIONS GOMA_ENABLE_SPARSE)
else()
message(STATUS "Sparse library not found")
set(Sparse_INCLUDES "")
endif()
else()
message(STATUS "Sparse library disabled.")
set(Sparse_INCLUDES "")
endif()
option(ENABLE_METIS "ENABLE_METIS" ON)
if(ENABLE_METIS)
set(METIS_PREFIX
"${Trilinos_DIR}/../../../"
CACHE PATH "set METIS library location")
find_package(METIS)
if(METIS_FOUND)
list(APPEND GOMA_COMPILE_DEFINITIONS GOMA_ENABLE_METIS)
message(STATUS "Metis found: ${METIS_INCLUDES}")
message(STATUS "Metis found: ${METIS_LIBRARIES}")
set(GOMA_TPL_LIBRARIES ${GOMA_TPL_LIBRARIES} ${METIS_LIBRARIES})
set(GOMA_TPL_INCLUDES ${GOMA_TPL_INCLUDES} ${METIS_INCLUDES})
else()
message(STATUS "metis library not found, disabling")
endif()
else()
message(STATUS "metis library disabled")
endif()
option(ENABLE_OMEGA_H "ENABLE_OMEGA_H" ON)
if(ENABLE_OMEGA_H)
find_package(Omega_h 9)
if(Omega_h_FOUND)
set_target_properties(Omega_h::omega_h PROPERTIES INTERFACE_COMPILE_OPTIONS
"")
set(GOMA_TPL_LIBRARIES ${GOMA_TPL_LIBRARIES} Omega_h::omega_h)
list(APPEND GOMA_COMPILE_DEFINITIONS GOMA_ENABLE_OMEGA_H)
else()
message(STATUS "Omega_h not found")
endif()
else()
message(STATUS "omega_h library disabled")
endif()
if(ENABLE_PETSC AND PETSC_FOUND)
set(GOMA_TPL_LIBRARIES ${GOMA_TPL_LIBRARIES} PkgConfig::PETSC)
list(APPEND GOMA_COMPILE_DEFINITIONS GOMA_ENABLE_PETSC)
endif()
# UMFPACK in trilinos
list(FIND Trilinos_TPL_LIST UMFPACK trilinos_package_index)
option(ENABLE_UMFPACK "ENABLE_UMFPACK" ON)
if(ENABLE_UMFPACK)
if(${trilinos_package_index} LESS 0)
message(STATUS "Trilinos not built with UMFPACK TPL")
message(STATUS "Checking for other umfpack")
find_package(UMFPACK)
if(UMFPACK_FOUND)
message(STATUS "UMFPACK found")
else()
message(STATUS "UMFPACK library not found")
endif()
if(ENABLE_UMFPACK)
message(STATUS "UMFPACK found")
list(APPEND GOMA_COMPILE_DEFINITIONS GOMA_ENABLE_UMFPACK)
set(GOMA_TPL_LIBRARIES ${GOMA_TPL_LIBRARIES} ${UMFPACK_LIBRARIES})
set(GOMA_TPL_INCLUDES ${GOMA_TPL_INCLUDES} ${UMFPACK_INCLUDES})
else()
message(STATUS "UMFPACK library disabled")
endif()
else()
message(STATUS "Trilinos built with UMFPACK TPL")
message(STATUS "\tEnabling UMFPACK in Goma")
list(APPEND GOMA_COMPILE_DEFINITIONS GOMA_ENABLE_UMFPACK)
endif()
else()
message(STATUS "UMFPACK disabled")
endif()
macro(option_definition OPTION VALUE)
option(${OPTION} "${OPTION}" ${VALUE})
if(${OPTION})
list(APPEND GOMA_COMPILE_DEFINITIONS ${OPTION})
endif()
endmacro()
if(ARPACK_FOUND)
if(ENABLE_ARPACK)
option(EIGEN_SERIAL "EIGEN_SERIAL" ON)
option(EIGEN_PARALLEL "EIGEN_PARALLEL" OFF)
else()
option(EIGEN_SERIAL "EIGEN_SERIAL" OFF)
option(EIGEN_PARALLEL "EIGEN_PARALLEL" OFF)
endif()
if(EIGEN_PARALLEL)
find_package(PARPACK)
set(GOMA_TPL_LIBRARIES ${GOMA_TPL_LIBRARIES} ${PARPACK_LIBRARIES}
${ARPACK_LIBRARIES})
if(NOT ARPACK_FOUND)
message(FATAL_ERROR "Cannot use EIGEN_PARALLEL without ARPACK Library")
endif()
if(NOT PARPACK_FOUND)
message(FATAL_ERROR "Cannot use EIGEN_PARALLEL without PARPACK Library")
endif()
list(APPEND GOMA_COMPILE_DEFINITIONS EIGEN_PARALLEL)
if(EIGEN_SERIAL)
message(WARNING "Using EIGEN_PARALLEL instead of EIGEN_SERIAL")
endif()
elseif(EIGEN_SERIAL)
if(NOT ${ARPACK_FOUND})
message(FATAL_ERROR "Cannot use EIGEN_SERIAL without ARPACK Library")
endif()
list(APPEND GOMA_COMPILE_DEFINITIONS EIGEN_SERIAL)
endif()
endif()
option(PRINT_STACK_TRACE_ON_EH "PRINT_STACK_TRACE_ON_EH" ON)
if(PRINT_STACK_TRACE_ON_EH)
list(APPEND GOMA_COMPILE_DEFINITIONS PRINT_STACK_TRACE_ON_EH)
set(CMAKE_EXE_LINKER_FLAGS "${CMAKE_EXE_LINKER_FLAGS} -rdynamic")
endif()
if(ENABLE_APREPRO_LIB AND SEACASAprepro_lib_FOUND)
list(APPEND GOMA_COMPILE_DEFINITIONS GOMA_ENABLE_APREPRO_LIB)
endif()
option_definition(DISABLE_COLOR_ERROR_PRINT OFF)
option_definition(COMPILER_64BIT ON)
option_definition(GOMA_ENABLE_AMESOS ON)
option_definition(TRILINOS ON)
option_definition(CHECK_FINITE OFF)
option_definition(NO_CHEBYSHEV_PLEASE ON)
option_definition(PARALLEL ON)
option_definition(FP_EXCEPT OFF)
option_definition(ANALEIG_PLEASE OFF)
option_definition(DO_NO_UNROLL OFF)
option_definition(ENABLE_LOGGING OFF)
option_definition(ENABLE_KOMPLEX OFF)
option_definition(PHASE_COUPLED_FILL OFF)
set(MDE
"27"
CACHE STRING "set MDE")
list(APPEND GOMA_COMPILE_DEFINITIONS MDE=${MDE})
set(MAX_EXTERNAL_FIELD
"4"
CACHE STRING "set MAX_EXTERNAL_FIELD")
list(APPEND GOMA_COMPILE_DEFINITIONS MAX_EXTERNAL_FIELD=${MAX_EXTERNAL_FIELD})
set(MAX_CONC
"4"
CACHE STRING "set MAX_CONC")
list(APPEND GOMA_COMPILE_DEFINITIONS MAX_CONC=${MAX_CONC})
set(MAX_PROB_VAR
"15"
CACHE STRING "set MAX_PROB_VAR")
list(APPEND GOMA_COMPILE_DEFINITIONS MAX_PROB_VAR=${MAX_PROB_VAR})
set(MAX_NUMBER_MATLS
"9"
CACHE STRING "set MAX_NUMBER_MATLS")
list(APPEND GOMA_COMPILE_DEFINITIONS MAX_NUMBER_MATLS=${MAX_NUMBER_MATLS})
set(GOMA_INCLUDES
include/adapt/omega_h_interface.h
include/adapt/resetup_problem.h
include/ac_conti.h
include/ac_hunt.h
include/ac_particles.h
include/ac_stability.h
include/ac_stability_util.h
include/ac_update_parameter.h
include/bc_colloc.h
include/bc_contact.h
include/bc_curve.h
include/bc_dirich.h
include/bc_integ.h
include/bc/rotate.h
include/bc_special.h
include/bc_surfacedomain.h
include/decomp_interface.h
include/density.h
include/dp_comm.h
include/dpi.h
include/dp_map_comm_vec.h
include/dp_types.h
include/dp_utils.h
include/dp_ghost.h
include/dp_vif.h
include/el_elm.h
include/el_elm_info.h
include/el_geom.h
include/el_quality.h
include/exo_conn.h
include/exo_struct.h
include/linalg/sparse_matrix.h
include/linalg/sparse_matrix_tpetra.h
include/linalg/sparse_matrix_epetra.h
include/load_field_variables.h
include/loca_const.h
include/loca_util_const.h
include/md_timer.h
include/metis_decomp.h
include/mm_as_alloc.h
include/mm_as_const.h
include/mm_as.h
include/mm_as_structs.h
include/mm_augc_util.h
include/mm_bc.h
include/mm_chemkin.h
include/mm_dil_viscosity.h
include/mm_elem_block_structs.h
include/mm_fill_aux.h
include/mm_fill_common.h
include/mm_fill_continuity.h
include/mm_fill_elliptic_mesh.h
include/mm_fill_em.h
include/mm_fill_energy.h
include/mm_fill_fill.h
include/mm_fill.h
include/mm_fill_jac.h
include/mm_fill_ls.h
include/mm_fill_ls_capillary_bcs.h
include/mm_fill_momentum.h
include/mm_fill_population.h
include/mm_fill_porous.h
include/mm_fill_potential.h
include/mm_fill_pthings.h
include/mm_fill_ptrs.h
include/mm_fill_rs.h
include/mm_fill_shell.h
include/mm_fill_solid.h
include/mm_fill_species.h
include/mm_fill_split.h
include/mm_fill_stress.h
include/mm_fill_terms.h
include/mm_fill_turbulent.h
include/mm_fill_util.h
include/mm_fill_stabilization.h
include/mm_flux.h
include/mm_input.h
include/mm_interface.h
include/mm_more_utils.h
include/mm_mp_const.h
include/mm_mp.h
include/mm_mp_structs.h
include/mm_names.h
include/mm_em_bc.h
include/mm_ns_bc.h
include/mm_numjac.h
include/mm_post_def.h
include/mm_post_proc.h
include/mm_prob_def.h
include/mm_qp_storage.h
include/mm_qtensor_model.h
include/mm_shell_bc.h
include/mm_shell_util.h
include/mm_sol_nonlinear.h
include/mm_species.h
include/mm_std_models.h
include/mm_std_models_shell.h
include/mm_unknown_map.h
include/mm_viscosity.h
include/polymer_time_const.h
include/rd_dpi.h
include/rd_exo.h
include/base_mesh.h
include/rd_mesh.h
include/rd_pixel_image.h
include/rf_allo.h
include/rf_bc_const.h
include/rf_bc.h
include/rf_element_storage_const.h
include/rf_element_storage_struct.h
include/rf_fem_const.h
include/rf_fem.h
include/rf_fill_const.h
include/rf_io_const.h
include/rf_io.h
include/rf_io_structs.h
include/rf_masks.h
include/rf_mp.h
include/rf_node_const.h
include/rf_pre_proc.h
include/rf_shape.h
include/rf_solve.h
include/rf_solver_const.h
include/rf_solver.h
include/rf_solve_segregated.h
include/rf_util.h
include/rf_vars_const.h
include/bc/rotate_coordinates.h
include/shell_tfmp_struct.h
include/shell_tfmp_util.h
include/sl_amesos_interface.h
include/sl_amesos2_interface.h
include/sl_aux.h
include/sl_auxutil.h
include/sl_aztecoo_interface.h
include/sl_eggroll_def.h
include/sl_eggroll.h
include/sl_lu.h
include/sl_petsc.h
include/sl_petsc_complex.h
include/sl_matrix_util.h
include/sl_stratimikos_interface.h
include/sl_umf.h
include/sl_util.h
include/sl_util_structs.h
include/std.h
include/wr_dpi.h
include/wr_exo.h
include/wr_side_data.h
include/wr_soln.h
include/brkfix/bbb.h
include/brkfix/exo_utils.h
include/brkfix/fix.h
include/brkfix/setup_fix_data.h)
set(GOMA_SOURCES
src/adapt/omega_h_interface.cpp
src/adapt/resetup_problem.c
src/ac_conti.c
src/ac_display_parameter.c
src/ac_hunt.c
src/ac_loca_interface.c
src/ac_particles.c
src/ac_stability.c
src/ac_stability_util.c
src/ac_update_parameter.c
src/bc_colloc.c
src/bc_contact.c
src/bc_curve.c
src/bc_dirich.c
src/bc_integ.c
src/bc/rotate.c
src/bc_special.c
src/bc_surfacedomain.c
src/decomp_interface.c
src/density.c
src/dp_comm.c
src/dp_map_comm_vec.c
src/dp_utils.c
src/dp_ghost.cpp
src/dp_vif.c
src/el_elm_info.c
src/el_quality.c
src/exo_conn.c
src/globals.c
src/linalg/sparse_matrix.cpp
src/linalg/sparse_matrix_tpetra.cpp
src/linalg/sparse_matrix_epetra.cpp
src/load_field_variables.c
src/loca_bord.c
src/loca_eigen_c2f.F
src/loca_eigen_cayley.F
src/loca_eigenvalue.c
src/loca_lib.c
src/loca_util.c
src/md_ieee.c
src/md_timer.c
src/metis_decomp.c
src/mm_as_alloc.c
src/mm_augc_util.c
src/mm_bc.c
src/mm_bc_conflict.c
src/mm_chemkin.c
src/mm_dil_viscosity.c
src/mm_fill_aux.c
src/mm_fill.c
src/mm_fill_common.c
src/mm_fill_continuity.c
src/mm_fill_elliptic_mesh.c
src/mm_fill_em.c
src/mm_fill_energy.c
src/mm_fill_fill.c
src/mm_fill_interface.c
src/mm_fill_jac.c
src/mm_fill_ls.c
src/mm_fill_ls_capillary_bcs.c
src/mm_fill_momentum.c
src/mm_fill_population.c
src/mm_fill_porous.c
src/mm_fill_potential.c
src/mm_fill_pthings.c
src/mm_fill_ptrs.c
src/mm_fill_rs.c
src/mm_fill_shell.c
src/mm_fill_solid.c
src/mm_fill_species.c
src/mm_fill_stress.c
src/mm_fill_terms.c
src/mm_fill_turbulent.c
src/mm_fill_split.c
src/mm_fill_util.c
src/mm_fill_stabilization.c
src/mm_flux.c
src/mm_input_bc.c
src/mm_input.c
src/mm_input_mp.c
src/mm_input_particles.c
src/mm_input_util.c
src/mm_interface.c
src/mm_matrl.c
src/mm_more_utils.c
src/mm_em_bc.c
src/mm_ns_bc.c
src/mm_numjac.c
src/mm_placid.c
src/mm_porous_EOS.c
src/mm_post_proc.c
src/mm_post_proc_util.c
src/mm_prob_def.c
src/mm_propertyJac.c
src/mm_qp_storage.c
src/mm_qtensor_model.c
src/mm_shell_bc.c
src/mm_shell_util.c
src/mm_sol_nonlinear.c
src/mm_species.c
src/mm_std_models.c
src/mm_std_models_shell.c
src/mm_unknown_map.c
src/mm_viscosity.c
src/polymer_time_const.c
src/rd_dpi.c
src/rd_exo.c
src/base_mesh.c
src/rd_mesh.c
src/rd_pixel_image2.c
src/rd_pixel_image.c
src/rf_allo.c
src/rf_element_storage.c
src/rf_node.c
src/rf_node_vars.c
src/rf_pre_proc.c
src/rf_setup_problem.c
src/rf_shape.c
src/rf_solve.c
src/rf_solve_segregated.c
src/rf_util.c
src/rf_vars.c
src/bc/rotate_coordinates.c
src/shell_tfmp_util.c
src/sl_amesos_interface.cpp
src/sl_amesos2_interface.cpp
src/sl_aux.c
src/sl_auxutil.c
src/sl_aztecoo_interface.cpp
src/sl_eggroll01.c
src/sl_eggroll02.c
src/sl_eggroll03.c
src/sl_eggroll04.c
src/sl_eggroll05.c
src/sl_eggrollutil.c
src/sl_eggrollwrap.c
src/sl_leastsquares.cpp
src/sl_lu.c
src/sl_lu_fill.c
src/sl_lustat.c
src/sl_ma28.c
src/sl_matrix_dump.c
src/sl_petsc.c
src/sl_petsc_pcd.c
src/sl_petsc_complex.c
src/sl_matrix_util.c
src/sl_squash.c
src/sl_stratimikos_interface.cpp
src/sl_umf.c
src/sl_util.c
src/wr_dpi.c
src/wr_exo.c
src/wr_side_data.c
src/wr_soln.c
src/brkfix/bbb.c
src/brkfix/setup_fix_data.cpp
src/brkfix/fix_exo_file.c)
set(GOMA_USER_INCLUDES
include/user_bc.h
include/user_continuation.h
include/user_mp_gen.h
include/user_mp.h
include/user_out_hkm.h
include/user_post.h
include/user_pre.h
include/user_shell.h
include/usr_print.h)
set(GOMA_USER_SOURCES
src/user_ac.c
src/user_bc.c
src/user_continuation.c
src/user_mp.c
src/user_mp_gen.c
src/user_out_hkm.c
src/user_post.c
src/user_pre.c
src/user_print.c
src/user_senkin.F)
set(GOMA_UTIL_INCLUDES
include/bc/rotate_util.h include/mm_eh.h include/util/goma_normal.h
include/util/aprepro_helper.h include/util/distance_helpers.h)
set(GOMA_UTIL_SOURCES src/bc/rotate_util.c src/util/goma_normal.c src/mm_eh.c
src/util/aprepro_helper.cpp src/util/distance_helpers.cpp)
set(GDS_INCLUDES include/gds/gds_vector.h)
set(GDS_SOURCES src/gds/gds_vector.c)
# Set a default build type for single-configuration CMake generators if no build
# type is set. https://blog.kitware.com/cmake-and-the-default-build-type/
set(default_build_type "RelWithDebInfo")
get_property(isMultiConfig GLOBAL PROPERTY GENERATOR_IS_MULTI_CONFIG)
if(isMultiConfig)
if(NOT "Asan" IN_LIST CMAKE_CONFIGURATION_TYPES)
list(APPEND CMAKE_CONFIGURATION_TYPES Asan)
endif()
if(NOT "Gprof" IN_LIST CMAKE_CONFIGURATION_TYPES)
list(APPEND CMAKE_CONFIGURATION_TYPES Gprof)
endif()
else()
set(allowedBuildTypes Asan Gprof Debug Release RelWithDebInfo MinSizeRel)
set_property(CACHE CMAKE_BUILD_TYPE PROPERTY STRINGS "${allowedBuildTypes}")
if(CMAKE_BUILD_TYPE AND NOT CMAKE_BUILD_TYPE IN_LIST allowedBuildTypes)
message(FATAL_ERROR "Invalid build type: ${CMAKE_BUILD_TYPE}")
endif()
endif()
if(NOT CMAKE_BUILD_TYPE AND NOT CMAKE_CONFIGURATION_TYPES)
message(
STATUS
"Setting build type to '${default_build_type}' as none was specified.")
set(CMAKE_BUILD_TYPE
"${default_build_type}"
CACHE STRING "Choose the type of build." FORCE)
endif()
if(${CMAKE_BUILD_TYPE} STREQUAL "Asan")
set(CMAKE_C_FLAGS_ASAN
"${CMAKE_C_FLAGS_DEBUG} -fsanitize=address -fno-omit-frame-pointer"
CACHE STRING
"Flags used by the C compiler for Asan build type or configuration."
FORCE)
mark_as_advanced(CMAKE_C_FLAGS_ASAN)
set(CMAKE_CXX_FLAGS_ASAN
"${CMAKE_CXX_FLAGS_DEBUG} -fsanitize=address -fno-omit-frame-pointer"
CACHE
STRING
"Flags used by the C++ compiler for Asan build type or configuration."
FORCE)
mark_as_advanced(CMAKE_CXX_FLAGS_ASAN)
set(CMAKE_Fortran_FLAGS_ASAN
"${CMAKE_Fortran_FLAGS_DEBUG} -fsanitize=address -fno-omit-frame-pointer"
CACHE
STRING
"Flags used by the Fortran compiler for Asan build type or configuration."
FORCE)
mark_as_advanced(CMAKE_Fortran_FLAGS_ASAN)
set(CMAKE_EXE_LINKER_FLAGS_ASAN
"${CMAKE_SHARED_LINKER_FLAGS_DEBUG} -fsanitize=address"
CACHE STRING
"Linker flags to be used to create executables for Asan build type."
FORCE)
mark_as_advanced(CMAKE_EXE_LINKER_FLAGS_ASAN)
set(CMAKE_SHARED_LINKER_FLAGS_ASAN
"${CMAKE_SHARED_LINKER_FLAGS_DEBUG} -fsanitize=address"
CACHE
STRING
"Linker lags to be used to create shared libraries for Asan build type."
FORCE)
mark_as_advanced(CMAKE_SHARED_LINKER_FLAGS_ASAN)
endif()
if(${CMAKE_BUILD_TYPE} STREQUAL "Gprof")
set(CMAKE_C_FLAGS_GPROF
"${CMAKE_C_FLAGS_DEBUG} -pg"
CACHE
STRING
"Flags used by the C compiler for Gprof build type or configuration."
FORCE)
mark_as_advanced(CMAKE_C_FLAGS_GPROF)
set(CMAKE_CXX_FLAGS_GPROF
"${CMAKE_CXX_FLAGS_DEBUG} -pg"
CACHE
STRING
"Flags used by the C++ compiler for Gprof build type or configuration."
FORCE)
mark_as_advanced(CMAKE_CXX_FLAGS_GPROF)
set(CMAKE_Fortran_FLAGS_GPROF
"${CMAKE_Fortran_FLAGS_DEBUG} -pg"
CACHE
STRING
"Flags used by the Fortran compiler for Gprof build type or configuration."
FORCE)
mark_as_advanced(CMAKE_Fortran_FLAGS_GPROF)
set(CMAKE_EXE_LINKER_FLAGS_GPROF
"${CMAKE_SHARED_LINKER_FLAGS_DEBUG} -pg"
CACHE
STRING
"Linker flags to be used to create executables for Gprof build type."
FORCE)
mark_as_advanced(CMAKE_EXE_LINKER_FLAGS_GPROF)
set(CMAKE_SHARED_LINKER_FLAGS_GPROF
"${CMAKE_SHARED_LINKER_FLAGS_DEBUG} -pg"
CACHE
STRING
"Linker lags to be used to create shared libraries for Gprof build type."
FORCE)
mark_as_advanced(CMAKE_SHARED_LINKER_FLAGS_GPROF)
endif()
option(ENABLE_WARNINGS "ENABLE_WARNINGS" ON)
execute_process(
COMMAND git describe --dirty --always --tags
OUTPUT_VARIABLE goma_git_version
RESULT_VARIABLE goma_using_git
WORKING_DIRECTORY ${PROJECT_SOURCE_DIR}
ERROR_QUIET)
if(goma_using_git EQUAL 0)
string(REGEX REPLACE "\n$" "" goma_git_version "${goma_git_version}")
else()
unset(goma_git_version)
endif()
if(goma_git_version)
list(APPEND GOMA_COMPILE_DEFINITIONS GIT_VERSION=${goma_git_version})
message(STATUS "Git found setting version: ${goma_git_version}")
endif()
message(STATUS "CMAKE_C_COMPILER=${CMAKE_C_COMPILER}")
message(STATUS "CMAKE_CXX_COMPILER=${CMAKE_CXX_COMPILER}")
message(STATUS "CMAKE_Fortran_COMPILER=${CMAKE_Fortran_COMPILER}")
message(STATUS "Trilinos_C_COMPILER=${Trilinos_C_COMPILER}")
message(STATUS "Trilinos_CXX_COMPILER=${Trilinos_CXX_COMPILER}")
message(STATUS "Trilinos_Fortran_COMPILER=${Trilinos_Fortran_COMPILER}")
if(ENABLE_PETSC AND PETSC_FOUND)
message(STATUS "PETSC_C_COMPILER=${PETSC_C_COMPILER}")
message(STATUS "PETSC_CXX_COMPILER=${PETSC_CXX_COMPILER}")
message(STATUS "PETSC_FORTRAN_COMPILER=${PETSC_FORTRAN_COMPILER}")
endif()
message(STATUS "CMAKE_BUILD_TYPE=${CMAKE_BUILD_TYPE}")
if(${CMAKE_BUILD_TYPE} STREQUAL "RelWithDebInfo")
message(STATUS "CMAKE_C_FLAGS_RELWITHDEBINFO=${CMAKE_C_FLAGS_RELWITHDEBINFO}")
message(
STATUS "CMAKE_CXX_FLAGS_RELWITHDEBINFO=${CMAKE_CXX_FLAGS_RELWITHDEBINFO}")
message(
STATUS
"CMAKE_Fortran_FLAGS_RELWITHDEBINFO=${CMAKE_Fortran_FLAGS_RELWITHDEBINFO}"
)
elseif(${CMAKE_BUILD_TYPE} STREQUAL "Release")
message(STATUS "CMAKE_C_FLAGS_RELEASE=${CMAKE_C_FLAGS_RELEASE}")
message(STATUS "CMAKE_CXX_FLAGS_RELEASE=${CMAKE_CXX_FLAGS_RELEASE}")
message(STATUS "CMAKE_Fortran_FLAGS_RELEASE=${CMAKE_Fortran_FLAGS_RELEASE}")
elseif(${CMAKE_BUILD_TYPE} STREQUAL "Debug")
message(STATUS "CMAKE_C_FLAGS_DEBUG=${CMAKE_C_FLAGS_DEBUG}")
message(STATUS "CMAKE_CXX_FLAGS_DEBUG=${CMAKE_CXX_FLAGS_DEBUG}")
message(STATUS "CMAKE_Fortran_FLAGS_DEBUG=${CMAKE_Fortran_FLAGS_DEBUG}")
elseif(${CMAKE_BUILD_TYPE} STREQUAL "Asan")
message(STATUS "CMAKE_C_FLAGS_ASAN=${CMAKE_C_FLAGS_ASAN}")
message(STATUS "CMAKE_CXX_FLAGS_ASAN=${CMAKE_CXX_FLAGS_ASAN}")
message(STATUS "CMAKE_Fortran_FLAGS_ASAN=${CMAKE_Fortran_FLAGS_ASAN}")
elseif(${CMAKE_BUILD_TYPE} STREQUAL "Gprof")
message(STATUS "CMAKE_C_FLAGS_GPROF=${CMAKE_C_FLAGS_GPROF}")
message(STATUS "CMAKE_CXX_FLAGS_GPROF=${CMAKE_CXX_FLAGS_GPROF}")
message(STATUS "CMAKE_Fortran_FLAGS_GPROF=${CMAKE_Fortran_FLAGS_GPROF}")
endif()
message("\n")
message(STATUS "Goma compile defines:")
foreach(d ${GOMA_COMPILE_DEFINITIONS})
message(STATUS "${d}")
endforeach()
message("\n")
set(GOMA_TPL_INCLUDES
${GOMA_TPL_INCLUDES}
${Sparse_INCLUDES}
${SEACASExodus_INCLUDE_DIRS}
${SEACASExodus_TPL_INCLUDE_DIRS}
${SEACASAprepro_lib_INCLUDE_DIRS}
${SEACASAprepro_lib_TPL_INCLUDE_DIRS}
${Trilinos_INCLUDE_DIRS}
${Trilinos_TPL_INCLUDE_DIRS}
${MPI_C_INCLUDE_PATH})
set(GOMA_TPL_LIBRARY_DIRS
${SEACASExodus_LIBRARY_DIRS} ${SEACASExodus_TPL_LIBRARY_DIRS}
${SEACASAprepro_lib_LIBRARY_DIRS} ${SEACASAprepro_lib_TPL_LIBRARY_DIRS}
${Trilinos_LIBRARY_DIRS} ${Trilinos_TPL_LIBRARY_DIRS})
if(ENABLE_PETSC AND PETSC_FOUND)