{"payload":{"feedbackUrl":"https://github.com/orgs/community/discussions/53140","repo":{"id":147663007,"defaultBranch":"trunk-patch","name":"hoomd-blue","ownerLogin":"glotzerlab","currentUserCanPush":false,"isFork":false,"isEmpty":false,"createdAt":"2018-09-06T11:23:27.000Z","ownerAvatar":"https://avatars.githubusercontent.com/u/25832198?v=4","public":true,"private":false,"isOrgOwned":true},"refInfo":{"name":"","listCacheKey":"v0:1716383396.0","currentOid":""},"activityList":{"items":[{"before":"d24343d62edff3bbbf23f7c42c63ea265340a370","after":"73457160e6b2213cbe0c612d2435a9be32080493","ref":"refs/heads/near_field_lubrication_coupling","pushedAt":"2024-05-22T17:22:37.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"Tobias-Dwyer","name":null,"path":"/Tobias-Dwyer","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/55504950?s=80&v=4"},"commit":{"message":"lubrication threshold","shortMessageHtmlLink":"lubrication threshold"}},{"before":"63236e037da738482e5a0f50c1a9c85eab377610","after":null,"ref":"refs/heads/dependabot/pip/sphinx-doc/requests-2.32.0","pushedAt":"2024-05-22T13:09:56.000Z","pushType":"branch_deletion","commitsCount":0,"pusher":{"login":"joaander","name":"Joshua A. Anderson","path":"/joaander","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/2197568?s=80&v=4"}},{"before":"83b702eb2708f54aee0729d10d42be4bedb4b783","after":"7d19d2fb8348e2236106177ff3a03b3698b486a0","ref":"refs/heads/trunk-patch","pushedAt":"2024-05-22T13:09:55.000Z","pushType":"pr_merge","commitsCount":2,"pusher":{"login":"joaander","name":"Joshua A. Anderson","path":"/joaander","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/2197568?s=80&v=4"},"commit":{"message":"Merge pull request #1787 from glotzerlab/dependabot/pip/sphinx-doc/requests-2.32.0\n\nBump requests from 2.31.0 to 2.32.0 in /sphinx-doc","shortMessageHtmlLink":"Merge pull request <a class=\"issue-link js-issue-link\" data-error-text=\"Failed to load title\" data-id=\"2307676828\" data-permission-text=\"Title is private\" data-url=\"https://github.com/glotzerlab/hoomd-blue/issues/1787\" data-hovercard-type=\"pull_request\" data-hovercard-url=\"/glotzerlab/hoomd-blue/pull/1787/hovercard\" href=\"https://github.com/glotzerlab/hoomd-blue/pull/1787\">#1787</a> from glotzerlab/dependabot/pip/sphinx-doc/re…"}},{"before":null,"after":"63236e037da738482e5a0f50c1a9c85eab377610","ref":"refs/heads/dependabot/pip/sphinx-doc/requests-2.32.0","pushedAt":"2024-05-21T08:23:48.000Z","pushType":"branch_creation","commitsCount":0,"pusher":{"login":"dependabot[bot]","name":null,"path":"/apps/dependabot","primaryAvatarUrl":"https://avatars.githubusercontent.com/in/29110?s=80&v=4"},"commit":{"message":"---\nupdated-dependencies:\n- dependency-name: requests\n  dependency-type: indirect\n...\n\nSigned-off-by: dependabot[bot] <support@github.com>","shortMessageHtmlLink":"---"}},{"before":"e1fffd78191f7e0dbd247477a8dbe64ca42d56c7","after":null,"ref":"refs/heads/update-docs","pushedAt":"2024-05-20T14:50:15.000Z","pushType":"branch_deletion","commitsCount":0,"pusher":{"login":"joaander","name":"Joshua A. Anderson","path":"/joaander","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/2197568?s=80&v=4"}},{"before":"be621be85a4b8108881e99249f35cf9dd38d1157","after":"83b702eb2708f54aee0729d10d42be4bedb4b783","ref":"refs/heads/trunk-patch","pushedAt":"2024-05-20T14:50:14.000Z","pushType":"pr_merge","commitsCount":9,"pusher":{"login":"joaander","name":"Joshua A. Anderson","path":"/joaander","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/2197568?s=80&v=4"},"commit":{"message":"Merge pull request #1786 from glotzerlab/update-docs\n\nDocumentation updates","shortMessageHtmlLink":"Merge pull request <a class=\"issue-link js-issue-link\" data-error-text=\"Failed to load title\" data-id=\"2302750031\" data-permission-text=\"Title is private\" data-url=\"https://github.com/glotzerlab/hoomd-blue/issues/1786\" data-hovercard-type=\"pull_request\" data-hovercard-url=\"/glotzerlab/hoomd-blue/pull/1786/hovercard\" href=\"https://github.com/glotzerlab/hoomd-blue/pull/1786\">#1786</a> from glotzerlab/update-docs"}},{"before":"640b4c7e89474f5a11241ddc0c7a5723a5a6a9c0","after":"24362f4ba3fdd1eb344b546a24b3a415b578d162","ref":"refs/heads/fix/#1762-zero-axis-ellipsoid","pushedAt":"2024-05-20T14:34:14.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"janbridley","name":"Jen Bradley","path":"/janbridley","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/55467578?s=80&v=4"},"commit":{"message":"Fix test_shape.py","shortMessageHtmlLink":"Fix test_shape.py"}},{"before":"0dad45e386fd70cb53471b5ebb02ab61eab67de4","after":"e1fffd78191f7e0dbd247477a8dbe64ca42d56c7","ref":"refs/heads/update-docs","pushedAt":"2024-05-17T15:01:28.000Z","pushType":"push","commitsCount":2,"pusher":{"login":"joaander","name":"Joshua A. Anderson","path":"/joaander","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/2197568?s=80&v=4"},"commit":{"message":"Remove singularity from the docs.\n\nglotzerlab-software now provides HPC resource specific conda packages.","shortMessageHtmlLink":"Remove singularity from the docs."}},{"before":"6481b05f9120a8a5bd135ddf597fce4af9aa77a7","after":"640b4c7e89474f5a11241ddc0c7a5723a5a6a9c0","ref":"refs/heads/fix/#1762-zero-axis-ellipsoid","pushedAt":"2024-05-17T14:48:17.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"janbridley","name":"Jen Bradley","path":"/janbridley","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/55467578?s=80&v=4"},"commit":{"message":"Change float comparison to <= 0","shortMessageHtmlLink":"Change float comparison to &lt;= 0"}},{"before":"a7df6b9e504fe0453b8308be9a593a6d91828736","after":"0dad45e386fd70cb53471b5ebb02ab61eab67de4","ref":"refs/heads/update-docs","pushedAt":"2024-05-17T14:31:13.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"joaander","name":"Joshua A. Anderson","path":"/joaander","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/2197568?s=80&v=4"},"commit":{"message":"Run pre-commit.","shortMessageHtmlLink":"Run pre-commit."}},{"before":"d0707c5990b02b994d362da7bc6bbee0f9129bc9","after":"a7df6b9e504fe0453b8308be9a593a6d91828736","ref":"refs/heads/update-docs","pushedAt":"2024-05-17T14:18:17.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"joaander","name":"Joshua A. Anderson","path":"/joaander","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/2197568?s=80&v=4"},"commit":{"message":"Import latest furo theme footer.","shortMessageHtmlLink":"Import latest furo theme footer."}},{"before":"c85ca0f8d1ed138013d925a29b07b8baf351a992","after":"d0707c5990b02b994d362da7bc6bbee0f9129bc9","ref":"refs/heads/update-docs","pushedAt":"2024-05-17T13:55:37.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"joaander","name":"Joshua A. Anderson","path":"/joaander","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/2197568?s=80&v=4"},"commit":{"message":"Add missing sphinx-copybutton","shortMessageHtmlLink":"Add missing sphinx-copybutton"}},{"before":"83a7accf9e84e7592dcdfbb67cd326ced779fe62","after":"c85ca0f8d1ed138013d925a29b07b8baf351a992","ref":"refs/heads/update-docs","pushedAt":"2024-05-17T13:53:06.000Z","pushType":"push","commitsCount":2,"pusher":{"login":"joaander","name":"Joshua A. Anderson","path":"/joaander","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/2197568?s=80&v=4"},"commit":{"message":"Use sphinxcontrib-googleanalytics","shortMessageHtmlLink":"Use sphinxcontrib-googleanalytics"}},{"before":null,"after":"1a6a3329f97d43bd6ed12f00991366cf92ac9098","ref":"refs/heads/sphere-resize-updater","pushedAt":"2024-05-17T13:19:00.000Z","pushType":"branch_creation","commitsCount":0,"pusher":{"login":"seoulfood","name":"Gabby Jones","path":"/seoulfood","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/13681698?s=80&v=4"},"commit":{"message":"fix sorter and communicator","shortMessageHtmlLink":"fix sorter and communicator"}},{"before":null,"after":"83a7accf9e84e7592dcdfbb67cd326ced779fe62","ref":"refs/heads/update-docs","pushedAt":"2024-05-17T13:15:00.000Z","pushType":"branch_creation","commitsCount":0,"pusher":{"login":"joaander","name":"Joshua A. Anderson","path":"/joaander","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/2197568?s=80&v=4"},"commit":{"message":"Update to latest furo.","shortMessageHtmlLink":"Update to latest furo."}},{"before":null,"after":"6481b05f9120a8a5bd135ddf597fce4af9aa77a7","ref":"refs/heads/fix/#1762-zero-axis-ellipsoid","pushedAt":"2024-05-16T19:59:38.000Z","pushType":"branch_creation","commitsCount":0,"pusher":{"login":"janbridley","name":"Jen Bradley","path":"/janbridley","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/55467578?s=80&v=4"},"commit":{"message":"Add error when ellipsoid axis is zero","shortMessageHtmlLink":"Add error when ellipsoid axis is zero"}},{"before":"fb1f10a784901ced8a5b9db1ebbe597aea30ce5e","after":"d328e79134ba8240df90967dbf361d4bd6066c38","ref":"refs/heads/mpcd-v4","pushedAt":"2024-05-16T17:07:56.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"mphoward","name":"Michael Howard","path":"/mphoward","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/6749016?s=80&v=4"},"commit":{"message":"Revise BUILD_MPCD option","shortMessageHtmlLink":"Revise BUILD_MPCD option"}},{"before":"9b8b8ad9b33504c9d9f8df8e2ba55725d97d6fa5","after":"fb1f10a784901ced8a5b9db1ebbe597aea30ce5e","ref":"refs/heads/mpcd-v4","pushedAt":"2024-05-16T16:52:52.000Z","pushType":"push","commitsCount":10,"pusher":{"login":"mphoward","name":"Michael Howard","path":"/mphoward","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/6749016?s=80&v=4"},"commit":{"message":"Update build instructions for MPCD","shortMessageHtmlLink":"Update build instructions for MPCD"}},{"before":"ce65b594871efb385e59772bc8aa5511b92b9866","after":"c93e034906a1a3b61aca75a69d3e901d0b2feffd","ref":"refs/heads/trunk-major","pushedAt":"2024-05-16T15:07:39.000Z","pushType":"push","commitsCount":52,"pusher":{"login":"joaander","name":"Joshua A. Anderson","path":"/joaander","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/2197568?s=80&v=4"},"commit":{"message":"Merge branch 'trunk-minor' into trunk-major","shortMessageHtmlLink":"Merge branch 'trunk-minor' into trunk-major"}},{"before":"8492a20c7f9a76972d97e9a81b00f8b7ad58a9bf","after":"be621be85a4b8108881e99249f35cf9dd38d1157","ref":"refs/heads/trunk-patch","pushedAt":"2024-05-16T15:07:27.000Z","pushType":"push","commitsCount":19,"pusher":{"login":"joaander","name":"Joshua A. Anderson","path":"/joaander","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/2197568?s=80&v=4"},"commit":{"message":"Merge pull request #1783 from glotzerlab/release-4.7.0\n\nRelease 4.7.0","shortMessageHtmlLink":"Merge pull request <a class=\"issue-link js-issue-link\" data-error-text=\"Failed to load title\" data-id=\"2300449462\" data-permission-text=\"Title is private\" data-url=\"https://github.com/glotzerlab/hoomd-blue/issues/1783\" data-hovercard-type=\"pull_request\" data-hovercard-url=\"/glotzerlab/hoomd-blue/pull/1783/hovercard\" href=\"https://github.com/glotzerlab/hoomd-blue/pull/1783\">#1783</a> from glotzerlab/release-4.7.0"}},{"before":"ff4c6d4d5b4a10dc4e8ad8335e095dbb2ebbb4df","after":null,"ref":"refs/heads/release-4.7.0","pushedAt":"2024-05-16T15:04:24.000Z","pushType":"branch_deletion","commitsCount":0,"pusher":{"login":"joaander","name":"Joshua A. Anderson","path":"/joaander","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/2197568?s=80&v=4"}},{"before":"68461aaa822dea8c5bec9cca92e2682f8095b679","after":"be621be85a4b8108881e99249f35cf9dd38d1157","ref":"refs/heads/trunk-minor","pushedAt":"2024-05-16T15:04:23.000Z","pushType":"pr_merge","commitsCount":7,"pusher":{"login":"joaander","name":"Joshua A. Anderson","path":"/joaander","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/2197568?s=80&v=4"},"commit":{"message":"Merge pull request #1783 from glotzerlab/release-4.7.0\n\nRelease 4.7.0","shortMessageHtmlLink":"Merge pull request <a class=\"issue-link js-issue-link\" data-error-text=\"Failed to load title\" data-id=\"2300449462\" data-permission-text=\"Title is private\" data-url=\"https://github.com/glotzerlab/hoomd-blue/issues/1783\" data-hovercard-type=\"pull_request\" data-hovercard-url=\"/glotzerlab/hoomd-blue/pull/1783/hovercard\" href=\"https://github.com/glotzerlab/hoomd-blue/pull/1783\">#1783</a> from glotzerlab/release-4.7.0"}},{"before":"99ea11b0fe7eae0aac31ec54e5a3a5e35e24ab0f","after":"ff4c6d4d5b4a10dc4e8ad8335e095dbb2ebbb4df","ref":"refs/heads/release-4.7.0","pushedAt":"2024-05-16T13:51:46.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"joaander","name":"Joshua A. Anderson","path":"/joaander","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/2197568?s=80&v=4"},"commit":{"message":"Fix release date.","shortMessageHtmlLink":"Fix release date."}},{"before":"1cc8b54ce34b9178fe8bbf76ca82befcad992d7e","after":"99ea11b0fe7eae0aac31ec54e5a3a5e35e24ab0f","ref":"refs/heads/release-4.7.0","pushedAt":"2024-05-16T13:44:06.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"joaander","name":"Joshua A. Anderson","path":"/joaander","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/2197568?s=80&v=4"},"commit":{"message":"Bump version to 4.7.0","shortMessageHtmlLink":"Bump version to 4.7.0"}},{"before":"8c305a4620c65549f4755c872f997b34d9bbf420","after":"1cc8b54ce34b9178fe8bbf76ca82befcad992d7e","ref":"refs/heads/release-4.7.0","pushedAt":"2024-05-16T13:38:36.000Z","pushType":"force_push","commitsCount":0,"pusher":{"login":"joaander","name":"Joshua A. Anderson","path":"/joaander","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/2197568?s=80&v=4"},"commit":{"message":"Update change log.","shortMessageHtmlLink":"Update change log."}},{"before":"46752e4d810ab5151c5cf995ef8a32dd66fcf0f9","after":"8c305a4620c65549f4755c872f997b34d9bbf420","ref":"refs/heads/release-4.7.0","pushedAt":"2024-05-16T13:37:49.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"joaander","name":"Joshua A. Anderson","path":"/joaander","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/2197568?s=80&v=4"},"commit":{"message":"Update change log.","shortMessageHtmlLink":"Update change log."}},{"before":null,"after":"46752e4d810ab5151c5cf995ef8a32dd66fcf0f9","ref":"refs/heads/release-4.7.0","pushedAt":"2024-05-16T13:05:52.000Z","pushType":"branch_creation","commitsCount":0,"pusher":{"login":"joaander","name":"Joshua A. Anderson","path":"/joaander","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/2197568?s=80&v=4"},"commit":{"message":"Update mailmap.","shortMessageHtmlLink":"Update mailmap."}},{"before":"d6c6c3fd2b2bda300593b767da246b1b748cc5fa","after":null,"ref":"refs/heads/feat/non_triangular_box_matrices_for_box_from_matrix","pushedAt":"2024-05-16T01:20:50.000Z","pushType":"branch_deletion","commitsCount":0,"pusher":{"login":"joaander","name":"Joshua A. Anderson","path":"/joaander","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/2197568?s=80&v=4"}},{"before":"1342a7a316d4d6b60738a45209417957d144a6c8","after":"68461aaa822dea8c5bec9cca92e2682f8095b679","ref":"refs/heads/trunk-minor","pushedAt":"2024-05-16T01:20:49.000Z","pushType":"pr_merge","commitsCount":1,"pusher":{"login":"joaander","name":"Joshua A. Anderson","path":"/joaander","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/2197568?s=80&v=4"},"commit":{"message":"Add support for creation of box object from non-triangular matrices (#1769)\n\n* from_box accepts general cell matrices now\r\n\r\n* add tests for non upper triangular matrices for box from_matrix\r\n\r\n* remove dimensions argument\r\n\r\n* linters\r\n\r\n* change box matrix for the test\r\n\r\n* add tolerance for box test and add test for 2D boxes\r\n\r\n* flake8 function name ignore\r\n\r\n* Change test function name\r\n\r\nCo-authored-by: Joshua A. Anderson <joaander@umich.edu>\r\n\r\n* update docstring to reflect differences wrt to_matrix\r\n\r\n* add from matrix back\r\n\r\n* return quaternion alongside box object\r\n\r\n* change tests for new api\r\n\r\n* [pre-commit.ci] auto fixes from pre-commit.com hooks\r\n\r\nfor more information, see https://pre-commit.ci\r\n\r\n* Revert \"Merge branch 'trunk-patch' into feat/non_triangular_box_matrices_for_box_from_matrix\"\r\n\r\nThis reverts commit 0d08f369619f81bc12f3046dec1e2fc4863255ea, reversing\r\nchanges made to 487359e47e7e9425b4cb48429278635bc13c4e81.\r\n\r\n* linting\r\n\r\n* [pre-commit.ci] auto fixes from pre-commit.com hooks\r\n\r\nfor more information, see https://pre-commit.ci\r\n\r\n* support 2D lattice vectors\r\n\r\n* swap matrices for rotation determination\r\n\r\n* add valueerror when 2d box is not properly set\r\n\r\n* return rotation matrix instead of quaternion\r\n\r\n* change and add more tests\r\n\r\n* update docstrings\r\n\r\n* [pre-commit.ci] auto fixes from pre-commit.com hooks\r\n\r\nfor more information, see https://pre-commit.ci\r\n\r\n* fix lines too long\r\n\r\n* small update to docstring\r\n\r\n* fix 2D incorrect numpy function\r\n\r\n* fix 2d box logic\r\n\r\n* [pre-commit.ci] auto fixes from pre-commit.com hooks\r\n\r\nfor more information, see https://pre-commit.ci\r\n\r\n* Restore dependabot.yaml and .pre-commit-config.yaml\r\n\r\n* Retore more files.\r\n\r\n* Update hoomd/box.py\r\n\r\n* Switch box_matrix initialization to explicitly use default (np.float64)\r\n\r\n* Switch to more explicit variable naming of box matrix\r\n\r\n* Parametrize test_from_basis_vectors_non_triangular tests\r\n\r\n---------\r\n\r\nCo-authored-by: Joshua A. Anderson <joaander@umich.edu>\r\nCo-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>\r\nCo-authored-by: Jen Bradley <55467578+janbridley@users.noreply.github.com>\r\nCo-authored-by: janbridley <bradleyjenj@gmail.com>","shortMessageHtmlLink":"Add support for creation of box object from non-triangular matrices (<a class=\"issue-link js-issue-link\" data-error-text=\"Failed to load title\" data-id=\"2259384269\" data-permission-text=\"Title is private\" data-url=\"https://github.com/glotzerlab/hoomd-blue/issues/1769\" data-hovercard-type=\"pull_request\" data-hovercard-url=\"/glotzerlab/hoomd-blue/pull/1769/hovercard\" href=\"https://github.com/glotzerlab/hoomd-blue/pull/1769\">#…</a>"}},{"before":"2eac3671e6e206e8daaadd24f0b3bd5d0a6b4830","after":"d6c6c3fd2b2bda300593b767da246b1b748cc5fa","ref":"refs/heads/feat/non_triangular_box_matrices_for_box_from_matrix","pushedAt":"2024-05-15T20:01:00.000Z","pushType":"push","commitsCount":3,"pusher":{"login":"janbridley","name":"Jen Bradley","path":"/janbridley","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/55467578?s=80&v=4"},"commit":{"message":"Parametrize test_from_basis_vectors_non_triangular tests","shortMessageHtmlLink":"Parametrize test_from_basis_vectors_non_triangular tests"}}],"hasNextPage":true,"hasPreviousPage":false,"activityType":"all","actor":null,"timePeriod":"all","sort":"DESC","perPage":30,"cursor":"djE6ks8AAAAEUTSZ4QA","startCursor":null,"endCursor":null}},"title":"Activity · glotzerlab/hoomd-blue"}