{"payload":{"feedbackUrl":"https://github.com/orgs/community/discussions/53140","repo":{"id":64924140,"defaultBranch":"master","name":"imputationserver","ownerLogin":"genepi","currentUserCanPush":false,"isFork":false,"isEmpty":false,"createdAt":"2016-08-04T10:02:40.000Z","ownerAvatar":"https://avatars.githubusercontent.com/u/930103?v=4","public":true,"private":false,"isOrgOwned":true},"refInfo":{"name":"","listCacheKey":"v0:1710327141.0","currentOid":""},"activityList":{"items":[{"before":"65392abaa52cc60814108c047722dfc33fc38008","after":"4d5e377eef99ad25e5c706a7ada80f7cbeedca25","ref":"refs/heads/master","pushedAt":"2024-03-22T16:10:36.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"lukfor","name":"Lukas Forer","path":"/lukfor","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/210220?s=80&v=4"},"commit":{"message":"Fix typo after merge","shortMessageHtmlLink":"Fix typo after merge"}},{"before":"8b864e92d5df2a111baf69d66f743d4601b692d8","after":"65392abaa52cc60814108c047722dfc33fc38008","ref":"refs/heads/master","pushedAt":"2024-03-22T16:08:09.000Z","pushType":"push","commitsCount":2,"pusher":{"login":"lukfor","name":"Lukas Forer","path":"/lukfor","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/210220?s=80&v=4"},"commit":{"message":"Merge remote-tracking branch 'origin/master'\n\n# Conflicts:\n#\tdocs/pgs/getting-started.md","shortMessageHtmlLink":"Merge remote-tracking branch 'origin/master'"}},{"before":"b9a7c8f21819b4965f72a6950955dfeb8aa29f45","after":"8b864e92d5df2a111baf69d66f743d4601b692d8","ref":"refs/heads/master","pushedAt":"2024-03-18T12:55:21.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"lukfor","name":"Lukas Forer","path":"/lukfor","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/210220?s=80&v=4"},"commit":{"message":"Update data-sensitivity.md","shortMessageHtmlLink":"Update data-sensitivity.md"}},{"before":"4c728b3d04db3569acf7570093fa0ab1bac995c1","after":"b9a7c8f21819b4965f72a6950955dfeb8aa29f45","ref":"refs/heads/master","pushedAt":"2024-03-17T09:26:54.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"lukfor","name":"Lukas Forer","path":"/lukfor","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/210220?s=80&v=4"},"commit":{"message":"Update getting-started.md","shortMessageHtmlLink":"Update getting-started.md"}},{"before":"ee52d24e6723511274f63c0a622e2de66d20ae97","after":"4c728b3d04db3569acf7570093fa0ab1bac995c1","ref":"refs/heads/master","pushedAt":"2024-03-17T09:26:31.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"lukfor","name":"Lukas Forer","path":"/lukfor","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/210220?s=80&v=4"},"commit":{"message":"Update getting-started.md","shortMessageHtmlLink":"Update getting-started.md"}},{"before":"5d3e94a643b6013ac30ff69eb869d8a86571c97c","after":"ee52d24e6723511274f63c0a622e2de66d20ae97","ref":"refs/heads/master","pushedAt":"2024-03-17T09:23:25.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"lukfor","name":"Lukas Forer","path":"/lukfor","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/210220?s=80&v=4"},"commit":{"message":"Update imputationserver-pgs.yaml","shortMessageHtmlLink":"Update imputationserver-pgs.yaml"}},{"before":"3b54ddd151c60281f1f6a9d0e2e278f2c9ffd114","after":"5d3e94a643b6013ac30ff69eb869d8a86571c97c","ref":"refs/heads/master","pushedAt":"2024-03-17T09:22:00.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"lukfor","name":"Lukas Forer","path":"/lukfor","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/210220?s=80&v=4"},"commit":{"message":"Fix wrong link to ref panels in docs","shortMessageHtmlLink":"Fix wrong link to ref panels in docs"}},{"before":"838297ea945e0e5d1de6530d0189627fa9ce8d1f","after":"3b54ddd151c60281f1f6a9d0e2e278f2c9ffd114","ref":"refs/heads/master","pushedAt":"2024-03-13T10:49:06.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"seppinho","name":"Sebastian Schoenherr","path":"/seppinho","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/1942824?s=80&v=4"},"commit":{"message":"Prepare release v2.0.0","shortMessageHtmlLink":"Prepare release v2.0.0"}},{"before":"3c4b37866f92b9644ed7b06a2b43e25afa272289","after":"838297ea945e0e5d1de6530d0189627fa9ce8d1f","ref":"refs/heads/master","pushedAt":"2024-02-08T17:10:47.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"seppinho","name":"Sebastian Schoenherr","path":"/seppinho","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/1942824?s=80&v=4"},"commit":{"message":"Prepare release v2.0.0-beta2","shortMessageHtmlLink":"Prepare release v2.0.0-beta2"}},{"before":"501865558787010b6f791041388a4e8af51a476d","after":null,"ref":"refs/heads/features/fix-allele-switches","pushedAt":"2024-02-08T13:05:11.000Z","pushType":"branch_deletion","commitsCount":0,"pusher":{"login":"seppinho","name":"Sebastian Schoenherr","path":"/seppinho","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/1942824?s=80&v=4"}},{"before":"17ce54325d7ad4d7e5f98af440beb0350cf03619","after":"3c4b37866f92b9644ed7b06a2b43e25afa272289","ref":"refs/heads/master","pushedAt":"2024-02-08T13:04:11.000Z","pushType":"pr_merge","commitsCount":1,"pusher":{"login":"seppinho","name":"Sebastian Schoenherr","path":"/seppinho","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/1942824?s=80&v=4"},"commit":{"message":"Fix allele-switch error message (#134)","shortMessageHtmlLink":"Fix allele-switch error message (<a class=\"issue-link js-issue-link\" data-error-text=\"Failed to load title\" data-id=\"2125134318\" data-permission-text=\"Title is private\" data-url=\"https://github.com/genepi/imputationserver/issues/134\" data-hovercard-type=\"pull_request\" data-hovercard-url=\"/genepi/imputationserver/pull/134/hovercard\" href=\"https://github.com/genepi/imputationserver/pull/134\">#134</a>)"}},{"before":null,"after":"501865558787010b6f791041388a4e8af51a476d","ref":"refs/heads/features/fix-allele-switches","pushedAt":"2024-02-08T12:11:52.000Z","pushType":"branch_creation","commitsCount":0,"pusher":{"login":"seppinho","name":"Sebastian Schoenherr","path":"/seppinho","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/1942824?s=80&v=4"},"commit":{"message":"Fix allele-switch error message","shortMessageHtmlLink":"Fix allele-switch error message"}},{"before":"946951399ab7d2440ed43dc26326019e155f21ec","after":null,"ref":"refs/heads/features/check-allele-switches","pushedAt":"2024-02-08T09:37:01.000Z","pushType":"branch_deletion","commitsCount":0,"pusher":{"login":"seppinho","name":"Sebastian Schoenherr","path":"/seppinho","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/1942824?s=80&v=4"}},{"before":"422780087a800886beb5f6142ecb5bfc18ae741f","after":"17ce54325d7ad4d7e5f98af440beb0350cf03619","ref":"refs/heads/master","pushedAt":"2024-02-08T09:36:58.000Z","pushType":"pr_merge","commitsCount":1,"pusher":{"login":"seppinho","name":"Sebastian Schoenherr","path":"/seppinho","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/1942824?s=80&v=4"},"commit":{"message":"Add refpanel option to limit allowed allele switches (#132)\n\n* Add refpanel option to limit allowed allele switches\r\n\r\n* Update allele switches messages","shortMessageHtmlLink":"Add refpanel option to limit allowed allele switches (<a class=\"issue-link js-issue-link\" data-error-text=\"Failed to load title\" data-id=\"2108305790\" data-permission-text=\"Title is private\" data-url=\"https://github.com/genepi/imputationserver/issues/132\" data-hovercard-type=\"pull_request\" data-hovercard-url=\"/genepi/imputationserver/pull/132/hovercard\" href=\"https://github.com/genepi/imputationserver/pull/132\">#132</a>)"}},{"before":"74ba9cca1d1197882c0f43d6f0919c737bd4addd","after":"946951399ab7d2440ed43dc26326019e155f21ec","ref":"refs/heads/features/check-allele-switches","pushedAt":"2024-02-08T09:36:05.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"seppinho","name":"Sebastian Schoenherr","path":"/seppinho","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/1942824?s=80&v=4"},"commit":{"message":"Simplify error message","shortMessageHtmlLink":"Simplify error message"}},{"before":"491222b6b182e89a4368f758124701e277593a70","after":"74ba9cca1d1197882c0f43d6f0919c737bd4addd","ref":"refs/heads/features/check-allele-switches","pushedAt":"2024-01-31T07:53:42.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"seppinho","name":"Sebastian Schoenherr","path":"/seppinho","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/1942824?s=80&v=4"},"commit":{"message":"Fix error message in assertion","shortMessageHtmlLink":"Fix error message in assertion"}},{"before":null,"after":"7f9e4cb044cd7488743e350129c57363db0c582c","ref":"refs/heads/fixes/qc-error-message","pushedAt":"2024-01-30T17:29:51.000Z","pushType":"branch_creation","commitsCount":0,"pusher":{"login":"seppinho","name":"Sebastian Schoenherr","path":"/seppinho","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/1942824?s=80&v=4"},"commit":{"message":"Return catched error message instead of task name","shortMessageHtmlLink":"Return catched error message instead of task name"}},{"before":"f504dbf9ac637d36eabfb6db89c9e50961056d97","after":"491222b6b182e89a4368f758124701e277593a70","ref":"refs/heads/features/check-allele-switches","pushedAt":"2024-01-30T16:55:21.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"seppinho","name":"Sebastian Schoenherr","path":"/seppinho","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/1942824?s=80&v=4"},"commit":{"message":"Update allele switches messages","shortMessageHtmlLink":"Update allele switches messages"}},{"before":null,"after":"f504dbf9ac637d36eabfb6db89c9e50961056d97","ref":"refs/heads/features/check-allele-switches","pushedAt":"2024-01-30T16:41:33.000Z","pushType":"branch_creation","commitsCount":0,"pusher":{"login":"seppinho","name":"Sebastian Schoenherr","path":"/seppinho","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/1942824?s=80&v=4"},"commit":{"message":"Add refpanel option to limit allowed allele switches","shortMessageHtmlLink":"Add refpanel option to limit allowed allele switches"}},{"before":"ed4ab03034ed8dd545fad45c59b9462215a3a2bd","after":"422780087a800886beb5f6142ecb5bfc18ae741f","ref":"refs/heads/master","pushedAt":"2024-01-30T10:18:43.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"lukfor","name":"Lukas Forer","path":"/lukfor","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/210220?s=80&v=4"},"commit":{"message":"Fix pgs tutorial","shortMessageHtmlLink":"Fix pgs tutorial"}},{"before":"0cc74ea75eba44612bd0cbbda4615d75561b46ea","after":"ed4ab03034ed8dd545fad45c59b9462215a3a2bd","ref":"refs/heads/master","pushedAt":"2024-01-30T10:16:36.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"lukfor","name":"Lukas Forer","path":"/lukfor","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/210220?s=80&v=4"},"commit":{"message":"Update pgs tutorial","shortMessageHtmlLink":"Update pgs tutorial"}},{"before":"0b6d26009089d76285c4e4ace22d1fad6f22ac98","after":"0cc74ea75eba44612bd0cbbda4615d75561b46ea","ref":"refs/heads/master","pushedAt":"2024-01-30T10:05:08.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"lukfor","name":"Lukas Forer","path":"/lukfor","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/210220?s=80&v=4"},"commit":{"message":"Add pgs tutorial","shortMessageHtmlLink":"Add pgs tutorial"}},{"before":"bd082011b808a4df3396985236f1c0cd3bc76ad2","after":"0b6d26009089d76285c4e4ace22d1fad6f22ac98","ref":"refs/heads/master","pushedAt":"2023-12-19T09:37:04.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"lukfor","name":"Lukas Forer","path":"/lukfor","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/210220?s=80&v=4"},"commit":{"message":"Update links to testdata","shortMessageHtmlLink":"Update links to testdata"}},{"before":"4d0e7d8d2bcf0209d4eac491a5b6049f58637506","after":"bd082011b808a4df3396985236f1c0cd3bc76ad2","ref":"refs/heads/master","pushedAt":"2023-12-18T14:49:35.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"lukfor","name":"Lukas Forer","path":"/lukfor","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/210220?s=80&v=4"},"commit":{"message":"Prepare release 2.0.0-beta1","shortMessageHtmlLink":"Prepare release 2.0.0-beta1"}},{"before":"47a12da7b817c15a829c40ccdf24c62f3f980ff5","after":null,"ref":"refs/heads/v2.0.x","pushedAt":"2023-12-18T14:44:40.000Z","pushType":"branch_deletion","commitsCount":0,"pusher":{"login":"lukfor","name":"Lukas Forer","path":"/lukfor","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/210220?s=80&v=4"}},{"before":"b56d7e52fb9f2d51af72582bf60f4cc87f4dc05f","after":"4d0e7d8d2bcf0209d4eac491a5b6049f58637506","ref":"refs/heads/master","pushedAt":"2023-12-18T14:44:36.000Z","pushType":"pr_merge","commitsCount":1,"pusher":{"login":"lukfor","name":"Lukas Forer","path":"/lukfor","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/210220?s=80&v=4"},"commit":{"message":"Improve and optimize pgs calculation  (#130)\n\n* Update to pgs-calc v0.6.0\r\n\r\n* Disable data export in pgs mode\r\n\r\n* Fix phasing only mode and add missing test-data\r\n\r\n* Add `pgsCategory` filter\r\n\r\n* Fix wrong path in meta file and update yaml\r\n\r\n* Fix copy and paste error in includeScores filename\r\n\r\n* Update cloudgene.yaml file for pgs\r\n\r\n* Improve error reporting in ancestry estimation\r\n\r\n* Fix syntax error in exception handling\r\n\r\n* Set population to mixed and hide input control\r\n\r\n* Make ancestry estimation optional\r\n\r\n* Remove prsweb test since we support only score collections\r\n\r\n* Remove unused r2 filtering because is now done by Minimac\r\n\r\n* Update pgsCategory filter\r\n\r\n* Disable password encryption for pgs results\r\n\r\n* Send email without password in pgs mode\r\n\r\n* Update info about pgs in input validation\r\n\r\n* Fix issue in zip file creation\r\n\r\n* Fix issue in ancestry estimation\r\n\r\n* Update status message\r\n\r\n* Update pages\r\n\r\n* Add polygenic score calculation to pages\r\n\r\n* Add PGS documentation\r\n\r\n* Update documentation and add link to testdata\r\n\r\n---------\r\n\r\nCo-authored-by: seppinho <sebastian.schoenherr@i-med.ac.at>","shortMessageHtmlLink":"Improve and optimize pgs calculation (<a class=\"issue-link js-issue-link\" data-error-text=\"Failed to load title\" data-id=\"2046823858\" data-permission-text=\"Title is private\" data-url=\"https://github.com/genepi/imputationserver/issues/130\" data-hovercard-type=\"pull_request\" data-hovercard-url=\"/genepi/imputationserver/pull/130/hovercard\" href=\"https://github.com/genepi/imputationserver/pull/130\">#130</a>)"}},{"before":"47a12da7b817c15a829c40ccdf24c62f3f980ff5","after":null,"ref":"refs/heads/features/pgs-optimization","pushedAt":"2023-12-18T14:25:24.000Z","pushType":"branch_deletion","commitsCount":0,"pusher":{"login":"lukfor","name":"Lukas Forer","path":"/lukfor","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/210220?s=80&v=4"}},{"before":null,"after":"47a12da7b817c15a829c40ccdf24c62f3f980ff5","ref":"refs/heads/v2.0.x","pushedAt":"2023-12-18T14:25:23.000Z","pushType":"branch_creation","commitsCount":0,"pusher":{"login":"lukfor","name":"Lukas Forer","path":"/lukfor","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/210220?s=80&v=4"},"commit":{"message":"Update documentation and add link to testdata","shortMessageHtmlLink":"Update documentation and add link to testdata"}},{"before":"016d448b116c604cbbd447bc14a2238ccae7567d","after":"47a12da7b817c15a829c40ccdf24c62f3f980ff5","ref":"refs/heads/features/pgs-optimization","pushedAt":"2023-12-18T13:39:42.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"lukfor","name":"Lukas Forer","path":"/lukfor","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/210220?s=80&v=4"},"commit":{"message":"Update documentation and add link to testdata","shortMessageHtmlLink":"Update documentation and add link to testdata"}},{"before":"183485fea7dce27308df078296f18fc2ecb33971","after":"016d448b116c604cbbd447bc14a2238ccae7567d","ref":"refs/heads/features/pgs-optimization","pushedAt":"2023-12-17T15:21:34.000Z","pushType":"push","commitsCount":3,"pusher":{"login":"lukfor","name":"Lukas Forer","path":"/lukfor","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/210220?s=80&v=4"},"commit":{"message":"Add PGS documentation","shortMessageHtmlLink":"Add PGS documentation"}}],"hasNextPage":true,"hasPreviousPage":false,"activityType":"all","actor":null,"timePeriod":"all","sort":"DESC","perPage":30,"cursor":"djE6ks8AAAAEHOzg_QA","startCursor":null,"endCursor":null}},"title":"Activity · genepi/imputationserver"}