{"payload":{"feedbackUrl":"https://github.com/orgs/community/discussions/53140","repo":{"id":44923521,"defaultBranch":"master","name":"Sniffles","ownerLogin":"fritzsedlazeck","currentUserCanPush":false,"isFork":false,"isEmpty":false,"createdAt":"2015-10-25T18:32:47.000Z","ownerAvatar":"https://avatars.githubusercontent.com/u/2081951?v=4","public":true,"private":false,"isOrgOwned":false},"refInfo":{"name":"","listCacheKey":"v0:1715014158.0","currentOid":""},"activityList":{"items":[{"before":"97fb29bad3a1a8b7973fb532badd19ca1e290711","after":"2291ca594c646c06b85f86534a5b8dbc449bd81b","ref":"refs/heads/master","pushedAt":"2024-05-06T19:09:13.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"hermannromanek","name":"Hermann","path":"/hermannromanek","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/129487986?s=80&v=4"},"commit":{"message":"Support -c/--contig also on single sample calling","shortMessageHtmlLink":"Support -c/--contig also on single sample calling"}},{"before":"ab99c07e5b972c6ec4312d425b44924481dcc1cb","after":"97fb29bad3a1a8b7973fb532badd19ca1e290711","ref":"refs/heads/master","pushedAt":"2024-05-06T16:45:17.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"hermannromanek","name":"Hermann","path":"/hermannromanek","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/129487986?s=80&v=4"},"commit":{"message":"Update version to 2.3.3","shortMessageHtmlLink":"Update version to 2.3.3"}},{"before":"218b6a3a49770a86ab28ee61626425694c6516b2","after":"ab99c07e5b972c6ec4312d425b44924481dcc1cb","ref":"refs/heads/master","pushedAt":"2024-05-06T16:37:14.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"hermannromanek","name":"Hermann","path":"/hermannromanek","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/129487986?s=80&v=4"},"commit":{"message":"#475 - Removed threading from main process\n\n(cherry picked from commit 4db0a6994fb34e8c79fb785e507f90214f07817f)","shortMessageHtmlLink":"#475 - Removed threading from main process"}},{"before":"48b9645c367e928d41556d2e2d582a358ab31918","after":"218b6a3a49770a86ab28ee61626425694c6516b2","ref":"refs/heads/master","pushedAt":"2024-04-28T21:00:58.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"hermannromanek","name":"Hermann","path":"/hermannromanek","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/129487986?s=80&v=4"},"commit":{"message":"#475 - Ensure workers shut down","shortMessageHtmlLink":"#475 - Ensure workers shut down"}},{"before":"d2d3bfd656332a46686d1e65a388a2145cca4052","after":"48b9645c367e928d41556d2e2d582a358ab31918","ref":"refs/heads/master","pushedAt":"2024-04-24T17:54:59.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"hermannromanek","name":"Hermann","path":"/hermannromanek","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/129487986?s=80&v=4"},"commit":{"message":"#474 - Fixing unbound local if no vcf is written","shortMessageHtmlLink":"#474 - Fixing unbound local if no vcf is written"}},{"before":"93057fb444c2e9e861448704ba55fe616c4dcbcf","after":"d2d3bfd656332a46686d1e65a388a2145cca4052","ref":"refs/heads/master","pushedAt":"2024-04-21T16:24:46.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"hermannromanek","name":"Hermann","path":"/hermannromanek","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/129487986?s=80&v=4"},"commit":{"message":"Fixed unhandled error #474","shortMessageHtmlLink":"Fixed unhandled error #474"}},{"before":"034d8a907ba535d53169975e39174418d44c6f26","after":"93057fb444c2e9e861448704ba55fe616c4dcbcf","ref":"refs/heads/master","pushedAt":"2024-04-11T07:29:59.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"hermannromanek","name":"Hermann","path":"/hermannromanek","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/129487986?s=80&v=4"},"commit":{"message":"Fixed P#45 - returning proper exit codes","shortMessageHtmlLink":"Fixed P#45 - returning proper exit codes"}},{"before":"e79ac1cc03827a59a6a3bb5bad20985bd9de4fe7","after":"034d8a907ba535d53169975e39174418d44c6f26","ref":"refs/heads/master","pushedAt":"2024-04-10T23:23:56.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"lfpaulin","name":"Luis Paulin","path":"/lfpaulin","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/17764146?s=80&v=4"},"commit":{"message":"Bug fix when catching exception of sys.exit/exit\n--version and --help exited with code error 1","shortMessageHtmlLink":"Bug fix when catching exception of sys.exit/exit"}},{"before":"13721cc633d4ca323d124b3d6cc6e8fda9b46d05","after":"e79ac1cc03827a59a6a3bb5bad20985bd9de4fe7","ref":"refs/heads/master","pushedAt":"2024-04-10T19:34:11.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"lfpaulin","name":"Luis Paulin","path":"/lfpaulin","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/17764146?s=80&v=4"},"commit":{"message":"Update release.yaml","shortMessageHtmlLink":"Update release.yaml"}},{"before":"2cdffd4fc4a78783f6467038828f4c9d3d36fed7","after":"13721cc633d4ca323d124b3d6cc6e8fda9b46d05","ref":"refs/heads/master","pushedAt":"2024-04-10T19:32:39.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"lfpaulin","name":"Luis Paulin","path":"/lfpaulin","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/17764146?s=80&v=4"},"commit":{"message":"version edit","shortMessageHtmlLink":"version edit"}},{"before":"7afd19dcb29eadb0bb5bbf95d528df320492c55a","after":"2cdffd4fc4a78783f6467038828f4c9d3d36fed7","ref":"refs/heads/master","pushedAt":"2024-04-10T19:24:29.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"lfpaulin","name":"Luis Paulin","path":"/lfpaulin","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/17764146?s=80&v=4"},"commit":{"message":"utils directory is moved to sniffles/\nutils is a common name for a directory so it could be the case another\napplications has same directory and I am not sure what conda is going\nto do.\nedlib and psutil have been moved to required dependencies","shortMessageHtmlLink":"utils directory is moved to sniffles/"}},{"before":"0cb927988dd1299bd0d3f415c7efacc563053bd6","after":"7afd19dcb29eadb0bb5bbf95d528df320492c55a","ref":"refs/heads/master","pushedAt":"2024-04-10T18:46:44.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"lfpaulin","name":"Luis Paulin","path":"/lfpaulin","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/17764146?s=80&v=4"},"commit":{"message":"Create __init__.py","shortMessageHtmlLink":"Create __init__.py"}},{"before":"dfd0d30772417b327d948a72e9fed5a5bdacf513","after":"0cb927988dd1299bd0d3f415c7efacc563053bd6","ref":"refs/heads/master","pushedAt":"2024-04-10T13:40:12.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"lfpaulin","name":"Luis Paulin","path":"/lfpaulin","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/17764146?s=80&v=4"},"commit":{"message":"Update release.yaml","shortMessageHtmlLink":"Update release.yaml"}},{"before":"8347167c776b51b8c398cf97b1b1bfecffb82c03","after":"dfd0d30772417b327d948a72e9fed5a5bdacf513","ref":"refs/heads/master","pushedAt":"2024-04-10T13:38:32.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"lfpaulin","name":"Luis Paulin","path":"/lfpaulin","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/17764146?s=80&v=4"},"commit":{"message":"Update release.yaml","shortMessageHtmlLink":"Update release.yaml"}},{"before":"667a994d9e932e1e7e8332199944713d01e31689","after":"8347167c776b51b8c398cf97b1b1bfecffb82c03","ref":"refs/heads/master","pushedAt":"2024-04-10T13:27:36.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"lfpaulin","name":"Luis Paulin","path":"/lfpaulin","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/17764146?s=80&v=4"},"commit":{"message":"setup and release for pypi","shortMessageHtmlLink":"setup and release for pypi"}},{"before":"fd31ee3962d7c588752e1926176c79912691d54e","after":"667a994d9e932e1e7e8332199944713d01e31689","ref":"refs/heads/master","pushedAt":"2024-04-09T17:59:46.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"hermannromanek","name":"Hermann","path":"/hermannromanek","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/129487986?s=80&v=4"},"commit":{"message":"Final changes for release 2.3","shortMessageHtmlLink":"Final changes for release 2.3"}},{"before":"f7b99c9a722fd478e505a65edd8c4a795fc93610","after":"fd31ee3962d7c588752e1926176c79912691d54e","ref":"refs/heads/master","pushedAt":"2024-04-04T21:08:41.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"lfpaulin","name":"Luis Paulin","path":"/lfpaulin","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/17764146?s=80&v=4"},"commit":{"message":"Maintainer added and contact updated","shortMessageHtmlLink":"Maintainer added and contact updated"}},{"before":"20a9836e7e17b9e40dfec735741cb770b753cc3d","after":"f7b99c9a722fd478e505a65edd8c4a795fc93610","ref":"refs/heads/master","pushedAt":"2024-04-04T19:33:12.000Z","pushType":"pr_merge","commitsCount":8,"pusher":{"login":"hermannromanek","name":"Hermann","path":"/hermannromanek","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/129487986?s=80&v=4"},"commit":{"message":"Merge pull request #451 from zhengxinchang/master\n\nFix missing genotype headers in genotyping(force call) mode","shortMessageHtmlLink":"Merge pull request #451 from zhengxinchang/master"}},{"before":"1e47c23a01d6b49045037bd0347776537ea85276","after":"20a9836e7e17b9e40dfec735741cb770b753cc3d","ref":"refs/heads/master","pushedAt":"2024-04-04T19:26:49.000Z","pushType":"push","commitsCount":3,"pusher":{"login":"hermannromanek","name":"Hermann","path":"/hermannromanek","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/129487986?s=80&v=4"},"commit":{"message":"#465 - fixed forced calling","shortMessageHtmlLink":"#465 - fixed forced calling"}},{"before":"ccf0c4d515e214c1e8d1f6e295d506bf2e09e174","after":"1e47c23a01d6b49045037bd0347776537ea85276","ref":"refs/heads/master","pushedAt":"2024-03-25T17:17:50.000Z","pushType":"pr_merge","commitsCount":2,"pusher":{"login":"hermannromanek","name":"Hermann","path":"/hermannromanek","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/129487986?s=80&v=4"},"commit":{"message":"Merge pull request #464 from ASLeonard/fix_build\n\nfix misspelled option in setup.cfg","shortMessageHtmlLink":"Merge pull request #464 from ASLeonard/fix_build"}},{"before":"d4a050632e114af16bcce4e440e845738d2b0922","after":"ccf0c4d515e214c1e8d1f6e295d506bf2e09e174","ref":"refs/heads/master","pushedAt":"2024-03-22T02:35:45.000Z","pushType":"push","commitsCount":2,"pusher":{"login":"lfpaulin","name":"Luis Paulin","path":"/lfpaulin","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/17764146?s=80&v=4"},"commit":{"message":"Merge remote-tracking branch 'origin/master'","shortMessageHtmlLink":"Merge remote-tracking branch 'origin/master'"}},{"before":"0eb3bb8bf3240b4dc0403bbcc58324d18703730c","after":"d4a050632e114af16bcce4e440e845738d2b0922","ref":"refs/heads/master","pushedAt":"2024-03-21T18:24:06.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"lfpaulin","name":"Luis Paulin","path":"/lfpaulin","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/17764146?s=80&v=4"},"commit":{"message":"Update setup.cfg","shortMessageHtmlLink":"Update setup.cfg"}},{"before":"dfc9c34cbf581ba8b6c6a63e42297e8760d6406f","after":"0eb3bb8bf3240b4dc0403bbcc58324d18703730c","ref":"refs/heads/master","pushedAt":"2024-03-21T18:22:35.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"lfpaulin","name":"Luis Paulin","path":"/lfpaulin","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/17764146?s=80&v=4"},"commit":{"message":"Update README.md","shortMessageHtmlLink":"Update README.md"}},{"before":"bc88ce58a575f60069bb193791eb623f5a429ba4","after":"dfc9c34cbf581ba8b6c6a63e42297e8760d6406f","ref":"refs/heads/master","pushedAt":"2024-02-27T20:55:08.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"hermannromanek","name":"Hermann","path":"/hermannromanek","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/129487986?s=80&v=4"},"commit":{"message":"Sniffles 2.3 Release candidate 2","shortMessageHtmlLink":"Sniffles 2.3 Release candidate 2"}},{"before":"643cb7b2f0d9d584eff4fec4fb61183b3ea63d25","after":"bc88ce58a575f60069bb193791eb623f5a429ba4","ref":"refs/heads/master","pushedAt":"2024-01-11T19:31:57.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"lfpaulin","name":"Luis Paulin","path":"/lfpaulin","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/17764146?s=80&v=4"},"commit":{"message":"Update README.md \n\nSupplementary tables","shortMessageHtmlLink":"Update README.md"}},{"before":"62851be735929a8ac4deb6784595256d07af9ade","after":"643cb7b2f0d9d584eff4fec4fb61183b3ea63d25","ref":"refs/heads/master","pushedAt":"2024-01-02T21:55:31.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"fritzsedlazeck","name":"Fritz Sedlazeck","path":"/fritzsedlazeck","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/2081951?s=80&v=4"},"commit":{"message":"Update README.md\n\nAdded paper for Sniffles2","shortMessageHtmlLink":"Update README.md"}},{"before":"595a27a55f7d2619c6bdd647de694e737f290315","after":"62851be735929a8ac4deb6784595256d07af9ade","ref":"refs/heads/master","pushedAt":"2024-01-02T21:05:50.000Z","pushType":"pr_merge","commitsCount":2,"pusher":{"login":"hermannromanek","name":"Hermann","path":"/hermannromanek","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/129487986?s=80&v=4"},"commit":{"message":"Merge pull request #447 from zhengxinchang/master\n\nsupport local reference for CRAM input","shortMessageHtmlLink":"Merge pull request #447 from zhengxinchang/master"}},{"before":"481cf2859e0e5ea97756734103ef6769647c5ea8","after":"595a27a55f7d2619c6bdd647de694e737f290315","ref":"refs/heads/master","pushedAt":"2023-08-07T21:30:38.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"fritzsedlazeck","name":"Fritz Sedlazeck","path":"/fritzsedlazeck","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/2081951?s=80&v=4"},"commit":{"message":"Update README.md\n\nupdate conda","shortMessageHtmlLink":"Update README.md"}},{"before":"c328a7c8b1489a97a70fdc0678bdb5215f16a6c5","after":"481cf2859e0e5ea97756734103ef6769647c5ea8","ref":"refs/heads/master","pushedAt":"2023-07-21T23:20:29.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"lfpaulin","name":"Luis Paulin","path":"/lfpaulin","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/17764146?s=80&v=4"},"commit":{"message":"Update README.md","shortMessageHtmlLink":"Update README.md"}},{"before":"31cf016fddc0fddaa86de89bf56b96e9c7c1c47b","after":"c328a7c8b1489a97a70fdc0678bdb5215f16a6c5","ref":"refs/heads/master","pushedAt":"2023-07-13T19:57:19.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"lfpaulin","name":"Luis Paulin","path":"/lfpaulin","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/17764146?s=80&v=4"},"commit":{"message":"Update README.md","shortMessageHtmlLink":"Update README.md"}}],"hasNextPage":true,"hasPreviousPage":false,"activityType":"all","actor":null,"timePeriod":"all","sort":"DESC","perPage":30,"cursor":"djE6ks8AAAAEQtpjugA","startCursor":null,"endCursor":null}},"title":"Activity ยท fritzsedlazeck/Sniffles"}