FAstqc DAta PArser - The Easiest way to parse FastQC results.
Check out this iPython Notebook for demo.
1. Recomended way to install is using pip :
pip install fadapa2. Alternatively you can install with esay_install :
easy_install fadapa3. You can also install from Github source code. :
cd
git clone https://github.com/fadapa/fadapa.git
cd fadapa
python setup.py install# import fadapa
from fadapa import Fadapa
#load file
f = Fadapa('/path/to/fastqc_output_file.txt')
#get file name
print(f.file_name)
#get entire content
print(f.content())
#get all module names and their status
print(f.summary())
#get raw data of any module
print(f.raw_data('module name'))
#get cleaned data of any module
print(f.clean_data('module name'))