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Histogram support for bedgraph format #317

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stephenshank opened this issue Sep 30, 2022 · 2 comments
Open

Histogram support for bedgraph format #317

stephenshank opened this issue Sep 30, 2022 · 2 comments

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@stephenshank
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Thanks for your work on this wonderful project! I am wondering if it is possible to support the bedgraph format on the histogram, or if there is any interest in doing so. At the moment it seems that only annotation JSONs are supported. I am interested in using this as a viewer for ChIP-seq peaks where the former format makes more sense.

@eweitz
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eweitz commented Oct 1, 2022

Interesting proposal! Could you provide some sample data?

@stephenshank
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Thank you for such a prompt and positive response! Some data can be found here:
https://galaxy.hyphy.org/api/datasets/889b3527af72ff94/display?to_ext=bedgraph

It's from this history and was generated with the bamCoverage tool on reads mapped to hg19 with BWA on an accession from this study with a 10kb window.

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