.gitpod.yml

tasks:
  - name: requirements
    init: |
       sudo apt-get update
       sudo apt-get install -y --no-install-recommends build-essential cmake ffmpeg libboost-all-dev libfftw3-dev libgsl-dev libpython3-dev openmpi-common
       pip install --no-cache cython numpy scipy matplotlib pint tqdm --constraint requirements.txt
       pip install --no-cache nbformat notebook jupyterlab 'jupyter_contrib_nbextensions==0.5.1'
       jupyter contrib nbextension install --user
       jupyter nbextension enable rubberband/main
       jupyter nbextension enable exercise2/main
       mkdir -p ~/.jupyter/lab/user-settings/\@jupyterlab/docmanager-extension
       mkdir -p ${GITPOD_REPO_ROOT}/.vscode
       echo '{"nbext_hide_incompat": false}' > ~/.jupyter/nbconfig/common.json
       echo '{"defaultViewers": {"markdown": "Markdown Preview"}}' > ~/.jupyter/lab/user-settings/\@jupyterlab/docmanager-extension/plugin.jupyterlab-settings
       echo '{"python.defaultInterpreterPath": "build/pypresso"}' > ${GITPOD_REPO_ROOT}/.vscode/settings.json
       echo 'export PYTHONPATH="${PYTHONPATH:+$PYTHONPATH:}${GITPOD_REPO_ROOT}/build/pypresso"' >> ~/.bashrc
    command: |
       mkdir build
       cd build
       cmake .. -D ESPRESSO_BUILD_WITH_GSL=ON -D ESPRESSO_BUILD_WITH_WALBERLA=ON
       make
       make tutorials
       for f in doc/tutorials/*/*.ipynb; do echo "configuring ${f}"; ./pypresso doc/tutorials/convert.py exercise2 --to-vscode-jupyter ${f}; done
       sed -i 's/espressomd.lb.LBFluidWalberlaGPU/espressomd.lb.LBFluidWalberla/; s/, \\"CUDA\\"\]/]/;' doc/tutorials/lattice_boltzmann/lattice_boltzmann_poiseuille_flow.ipynb doc/tutorials/active_matter/active_matter.ipynb

vscode:
  extensions:
    - ms-python.python
    - ms-toolsai.jupyter
    - ms-toolsai.jupyter-keymap
    - ms-toolsai.jupyter-renderers