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Validation does not handle nullfavours correctly. #1253

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2 tasks done
SevKohler opened this issue Feb 22, 2024 · 0 comments
Open
2 tasks done

Validation does not handle nullfavours correctly. #1253

SevKohler opened this issue Feb 22, 2024 · 0 comments
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bug Something isn't working

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@SevKohler
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SevKohler commented Feb 22, 2024 •
edited

Before reporting an issue

  • I have searched existing issues
  • I have reproduced the issue with the latest release

Environment information

ehrbase next
openEHR_SDK newest
Generator version used for composition: 0.18.0

Steps to reproduce

send json to ehrbase

Expected behavior

Validates successfully

Actual result

Demands Zeitpunkt der Probenentnahme, even thou it is provided as nullflavour.
Same goes for Zugehörige Laborprobe.

"Error occurred while merging composition in EHRbase: Wrong Status code. Expected: [200, 201, 204]. Got: 422. Error message: {"error":"Unprocessable Entity","message":"/content[openEHR-EHR-OBSERVATION.laboratory_test_result.v1 and name/value='Befund']/data[at0001]/events[at0002]/data[at0003]/items[openEHR-EHR-CLUSTER.specimen.v1]/items[at0015]/value: Attribute has 0 occurrences, but must be 1..1, /content[openEHR-EHR-OBSERVATION.laboratory_test_result.v1 and name/value='Befund']/data[at0001]/events[at0002]/data[at0003]/items[openEHR-EHR-CLUSTER.laboratory_test_panel.v0 and name/value='Kultur']/items[openEHR-EHR-CLUSTER.laboratory_test_analyte.v1 and name/value='Pro Erreger']/items[at0026 and name/value='Zugehörige Laborprobe']/value: Attribute has 0 occurrences, but must be 1..1, /content[openEHR-EHR-OBSERVATION.laboratory_test_result.v1 and name/value='Befund']/data[at0001]/events[at0002]/data[at0003]/items[openEHR-EHR-CLUSTER.laboratory_test_panel.v0 and name/value='Kultur']/items[openEHR-EHR-CLUSTER.laboratory_test_analyte.v1 and name/value='Pro Erreger']/items[at0026 and name/value='Zugehörige Laborprobe']/value: Attribute has 0 occurrences, but must be 1..1"}"

Further information

JSON

Template:
https://ckm.highmed.org/ckm/templates/1246.169.69

{
  "_type" : "COMPOSITION",
  "name" : {
    "_type" : "DV_TEXT",
    "value" : "Mikrobiologischer Befund"
  },
  "archetype_details" : {
    "archetype_id" : {
      "value" : "openEHR-EHR-COMPOSITION.report-result.v1"
    },
    "template_id" : {
      "value" : "Mikrobiologischer Befund"
    },
    "rm_version" : "1.0.4"
  },
  "feeder_audit" : {
    "_type" : "FEEDER_AUDIT",
    "originating_system_item_ids" : [ {
      "_type" : "DV_IDENTIFIER",
      "id" : "Observation/48f361c9-4c15-470f-8f5c-b7f135a80c5e/_history/1",
      "type" : "fhir_logical_id"
    }, {
      "_type" : "DV_IDENTIFIER",
      "assigner" : "fhir_patient_id",
      "id" : "Patient/b8b51951-4b57-4b5a-a1c7-56c52f8fbd5d/_history/1"
    }, {
      "_type" : "DV_IDENTIFIER",
      "id" : "07f602e0-579e-4fe3-95af-381728bf0d49",
      "type" : "fhir_patient_identifier"
    } ],
    "originating_system_audit" : {
      "_type" : "FEEDER_AUDIT_DETAILS",
      "system_id" : "FHIR-Bridge"
    }
  },
  "language" : {
    "_type" : "CODE_PHRASE",
    "terminology_id" : {
      "_type" : "TERMINOLOGY_ID",
      "value" : "ISO_639-1"
    },
    "code_string" : "de"
  },
  "territory" : {
    "_type" : "CODE_PHRASE",
    "terminology_id" : {
      "_type" : "TERMINOLOGY_ID",
      "value" : "ISO_3166-1"
    },
    "code_string" : "DE"
  },
  "category" : {
    "_type" : "DV_CODED_TEXT",
    "value" : "event",
    "defining_code" : {
      "_type" : "CODE_PHRASE",
      "terminology_id" : {
        "_type" : "TERMINOLOGY_ID",
        "value" : "openehr"
      },
      "code_string" : "433"
    }
  },
  "composer" : {
    "_type" : "PARTY_IDENTIFIED",
    "identifiers" : [ {
      "_type" : "DV_IDENTIFIER",
      "assigner" : "https://www.medizininformatik-initiative.de/fhir/core/CodeSystem/core-location-identifiers",
      "id" : "Charité"
    } ]
  },
  "context" : {
    "_type" : "EVENT_CONTEXT",
    "start_time" : {
      "_type" : "DV_DATE_TIME",
      "value" : "2018-11-20T12:05:00.000+01:00"
    },
    "setting" : {
      "_type" : "DV_CODED_TEXT",
      "value" : "secondary medical care",
      "defining_code" : {
        "_type" : "CODE_PHRASE",
        "terminology_id" : {
          "_type" : "TERMINOLOGY_ID",
          "value" : "openehr"
        },
        "code_string" : "232"
      }
    },
    "other_context" : {
      "_type" : "ITEM_TREE",
      "name" : {
        "_type" : "DV_TEXT",
        "value" : "Tree"
      },
      "items" : [ {
        "_type" : "ELEMENT",
        "name" : {
          "_type" : "DV_TEXT",
          "value" : "Bericht ID"
        },
        "value" : {
          "_type" : "DV_TEXT",
          "value" : "59826-8_1234567890"
        },
        "archetype_node_id" : "at0002"
      }, {
        "_type" : "ELEMENT",
        "name" : {
          "_type" : "DV_TEXT",
          "value" : "Status"
        },
        "value" : {
          "_type" : "DV_TEXT",
          "value" : "Endbefund"
        },
        "archetype_node_id" : "at0005"
      }, {
        "_type" : "CLUSTER",
        "name" : {
          "_type" : "DV_TEXT",
          "value" : "Fallidentifikation"
        },
        "archetype_details" : {
          "archetype_id" : {
            "value" : "openEHR-EHR-CLUSTER.case_identification.v0"
          },
          "template_id" : {
            "value" : "Mikrobiologischer Befund"
          },
          "rm_version" : "1.0.4"
        },
        "items" : [ {
          "_type" : "ELEMENT",
          "name" : {
            "_type" : "DV_TEXT",
            "value" : "Fall-Kennung"
          },
          "value" : {
            "_type" : "DV_TEXT",
            "value" : "F_0000001"
          },
          "archetype_node_id" : "at0001"
        } ],
        "archetype_node_id" : "openEHR-EHR-CLUSTER.case_identification.v0"
      } ],
      "archetype_node_id" : "at0001"
    }
  },
  "content" : [ {
    "_type" : "OBSERVATION",
    "name" : {
      "_type" : "DV_TEXT",
      "value" : "Befund"
    },
    "archetype_details" : {
      "archetype_id" : {
        "value" : "openEHR-EHR-OBSERVATION.laboratory_test_result.v1"
      },
      "template_id" : {
        "value" : "Mikrobiologischer Befund"
      },
      "rm_version" : "1.0.4"
    },
    "language" : {
      "_type" : "CODE_PHRASE",
      "terminology_id" : {
        "_type" : "TERMINOLOGY_ID",
        "value" : "ISO_639-1"
      },
      "code_string" : "de"
    },
    "encoding" : {
      "_type" : "CODE_PHRASE",
      "terminology_id" : {
        "_type" : "TERMINOLOGY_ID",
        "value" : "IANA_character-sets"
      },
      "code_string" : "UTF-8"
    },
    "subject" : {
      "_type" : "PARTY_SELF"
    },
    "data" : {
      "name" : {
        "_type" : "DV_TEXT",
        "value" : "Event Series"
      },
      "origin" : {
        "_type" : "DV_DATE_TIME",
        "value" : "2018-11-20T12:05:00.000+01:00"
      },
      "events" : [ {
        "_type" : "POINT_EVENT",
        "name" : {
          "_type" : "DV_TEXT",
          "value" : "Jedes Ereignis"
        },
        "time" : {
          "_type" : "DV_DATE_TIME",
          "value" : "2018-11-20T12:05:00.000+01:00"
        },
        "data" : {
          "_type" : "ITEM_TREE",
          "name" : {
            "_type" : "DV_TEXT",
            "value" : "Tree"
          },
          "items" : [ {
            "_type" : "ELEMENT",
            "name" : {
              "_type" : "DV_TEXT",
              "value" : "Labortest-Bezeichnung"
            },
            "value" : {
              "_type" : "DV_CODED_TEXT",
              "value" : "Microbiology studies",
              "defining_code" : {
                "_type" : "CODE_PHRASE",
                "terminology_id" : {
                  "_type" : "TERMINOLOGY_ID",
                  "value" : "LOINC"
                },
                "code_string" : "18725-2"
              }
            },
            "archetype_node_id" : "at0005"
          }, {
            "_type" : "CLUSTER",
            "name" : {
              "_type" : "DV_TEXT",
              "value" : "Probe"
            },
            "archetype_details" : {
              "archetype_id" : {
                "value" : "openEHR-EHR-CLUSTER.specimen.v1"
              },
              "template_id" : {
                "value" : "Mikrobiologischer Befund"
              },
              "rm_version" : "1.0.4"
            },
            "items" : [ {
              "_type" : "ELEMENT",
              "name" : {
                "_type" : "DV_TEXT",
                "value" : "Probenart"
              },
              "null_flavour" : {
                "_type" : "DV_CODED_TEXT",
                "value" : "no information",
                "defining_code" : {
                  "_type" : "CODE_PHRASE",
                  "terminology_id" : {
                    "_type" : "TERMINOLOGY_ID",
                    "value" : "openehr"
                  },
                  "code_string" : "271"
                }
              },
              "archetype_node_id" : "at0029"
            }, {
              "_type" : "ELEMENT",
              "name" : {
                "_type" : "DV_TEXT",
                "value" : "Laborprobenidentifikator"
              },
              "null_flavour" : {
                "_type" : "DV_CODED_TEXT",
                "value" : "no information",
                "defining_code" : {
                  "_type" : "CODE_PHRASE",
                  "terminology_id" : {
                    "_type" : "TERMINOLOGY_ID",
                    "value" : "openehr"
                  },
                  "code_string" : "271"
                }
              },
              "archetype_node_id" : "at0001"
            }, {
              "_type" : "ELEMENT",
              "name" : {
                "_type" : "DV_TEXT",
                "value" : "Zeitpunkt des Probeneingangs"
              },
              "null_flavour" : {
                "_type" : "DV_CODED_TEXT",
                "value" : "no information",
                "defining_code" : {
                  "_type" : "CODE_PHRASE",
                  "terminology_id" : {
                    "_type" : "TERMINOLOGY_ID",
                    "value" : "openehr"
                  },
                  "code_string" : "271"
                }
              },
              "archetype_node_id" : "at0034"
            }, {
              "_type" : "ELEMENT",
              "name" : {
                "_type" : "DV_TEXT",
                "value" : "Zeitpunkt der Probenentnahme"
              },
              "null_flavour" : {
                "_type" : "DV_CODED_TEXT",
                "value" : "no information",
                "defining_code" : {
                  "_type" : "CODE_PHRASE",
                  "terminology_id" : {
                    "_type" : "TERMINOLOGY_ID",
                    "value" : "openehr"
                  },
                  "code_string" : "271"
                }
              },
              "archetype_node_id" : "at0015"
            } ],
            "archetype_node_id" : "openEHR-EHR-CLUSTER.specimen.v1"
          }, {
            "_type" : "CLUSTER",
            "name" : {
              "_type" : "DV_TEXT",
              "value" : "Kultur"
            },
            "archetype_details" : {
              "archetype_id" : {
                "value" : "openEHR-EHR-CLUSTER.laboratory_test_panel.v0"
              },
              "template_id" : {
                "value" : "Mikrobiologischer Befund"
              },
              "rm_version" : "1.0.4"
            },
            "items" : [ {
              "_type" : "CLUSTER",
              "name" : {
                "_type" : "DV_TEXT",
                "value" : "Pro Erreger"
              },
              "archetype_details" : {
                "archetype_id" : {
                  "value" : "openEHR-EHR-CLUSTER.laboratory_test_analyte.v1"
                },
                "template_id" : {
                  "value" : "Mikrobiologischer Befund"
                },
                "rm_version" : "1.0.4"
              },
              "items" : [ {
                "_type" : "ELEMENT",
                "name" : {
                  "_type" : "DV_TEXT",
                  "value" : "Nachweis"
                },
                "value" : {
                  "_type" : "DV_TEXT",
                  "value" : "Nachweis"
                },
                "archetype_node_id" : "at0024"
              }, {
                "_type" : "ELEMENT",
                "name" : {
                  "_type" : "DV_TEXT",
                  "value" : "Erregername"
                },
                "value" : {
                  "_type" : "DV_CODED_TEXT",
                  "value" : "Severe acute respiratory syndrome coronavirus 2 (organism)",
                  "defining_code" : {
                    "_type" : "CODE_PHRASE",
                    "terminology_id" : {
                      "_type" : "TERMINOLOGY_ID",
                      "value" : "http://snomed.info/sct"
                    },
                    "code_string" : "840533007"
                  }
                },
                "archetype_node_id" : "at0001"
              }, {
                "_type" : "CLUSTER",
                "name" : {
                  "_type" : "DV_TEXT",
                  "value" : "Erregerdetails"
                },
                "archetype_details" : {
                  "archetype_id" : {
                    "value" : "openEHR-EHR-CLUSTER.erregerdetails.v1"
                  },
                  "template_id" : {
                    "value" : "Mikrobiologischer Befund"
                  },
                  "rm_version" : "1.0.4"
                },
                "items" : [ {
                  "_type" : "CLUSTER",
                  "name" : {
                    "_type" : "DV_TEXT",
                    "value" : "Antibiogramm"
                  },
                  "archetype_details" : {
                    "archetype_id" : {
                      "value" : "openEHR-EHR-CLUSTER.laboratory_test_panel.v0"
                    },
                    "template_id" : {
                      "value" : "Mikrobiologischer Befund"
                    },
                    "rm_version" : "1.0.4"
                  },
                  "items" : [ {
                    "_type" : "CLUSTER",
                    "name" : {
                      "_type" : "DV_TEXT",
                      "value" : "Pro Antibiotikum"
                    },
                    "archetype_details" : {
                      "archetype_id" : {
                        "value" : "openEHR-EHR-CLUSTER.laboratory_test_analyte.v1"
                      },
                      "template_id" : {
                        "value" : "Mikrobiologischer Befund"
                      },
                      "rm_version" : "1.0.4"
                    },
                    "items" : [ {
                      "_type" : "ELEMENT",
                      "name" : {
                        "_type" : "DV_TEXT",
                        "value" : "Antibiotikum"
                      },
                      "value" : {
                        "_type" : "DV_CODED_TEXT",
                        "value" : "Aztreonam [Susceptibility]",
                        "defining_code" : {
                          "_type" : "CODE_PHRASE",
                          "terminology_id" : {
                            "_type" : "TERMINOLOGY_ID",
                            "value" : "http://loinc.org"
                          },
                          "code_string" : "18868-0"
                        }
                      },
                      "archetype_node_id" : "at0024"
                    }, {
                      "_type" : "ELEMENT",
                      "name" : {
                        "_type" : "DV_TEXT",
                        "value" : "Minimale Hemmkonzentration"
                      },
                      "value" : {
                        "_type" : "DV_QUANTITY",
                        "units" : "mg/L",
                        "magnitude" : 32.0
                      },
                      "archetype_node_id" : "at0001"
                    }, {
                      "_type" : "ELEMENT",
                      "name" : {
                        "_type" : "DV_TEXT",
                        "value" : "Resistenz"
                      },
                      "value" : {
                        "_type" : "DV_CODED_TEXT",
                        "value" : "Susceptible, standard dosing regimen",
                        "defining_code" : {
                          "_type" : "CODE_PHRASE",
                          "terminology_id" : {
                            "_type" : "TERMINOLOGY_ID",
                            "value" : "http://highmed.org/fhir/CodeSystem/ic/resistenzklassen-antibiogramm-eucast"
                          },
                          "code_string" : "Susceptible, standard dosing regimen"
                        }
                      },
                      "archetype_node_id" : "at0004"
                    } ],
                    "archetype_node_id" : "openEHR-EHR-CLUSTER.laboratory_test_analyte.v1"
                  } ],
                  "archetype_node_id" : "openEHR-EHR-CLUSTER.laboratory_test_panel.v0"
                }, {
                  "_type" : "ELEMENT",
                  "name" : {
                    "_type" : "DV_TEXT",
                    "value" : "MRE Klasse"
                  },
                  "value" : {
                    "_type" : "DV_CODED_TEXT",
                    "value" : "3MRGN",
                    "defining_code" : {
                      "_type" : "CODE_PHRASE",
                      "terminology_id" : {
                        "_type" : "TERMINOLOGY_ID",
                        "value" : "http://highmed.org/fhir/CodeSystem/ic/mre-klassen-lokal"
                      },
                      "code_string" : "3MRGN"
                    }
                  },
                  "archetype_node_id" : "at0018"
                } ],
                "archetype_node_id" : "openEHR-EHR-CLUSTER.erregerdetails.v1"
              }, {
                "_type" : "ELEMENT",
                "name" : {
                  "_type" : "DV_TEXT",
                  "value" : "Zugehörige Laborprobe"
                },
                "null_flavour" : {
                  "_type" : "DV_CODED_TEXT",
                  "value" : "unknown",
                  "defining_code" : {
                    "_type" : "CODE_PHRASE",
                    "terminology_id" : {
                      "_type" : "TERMINOLOGY_ID",
                      "value" : "openehr"
                    },
                    "code_string" : "253"
                  }
                },
                "archetype_node_id" : "at0026"
              } ],
              "archetype_node_id" : "openEHR-EHR-CLUSTER.laboratory_test_analyte.v1"
            } ],
            "archetype_node_id" : "openEHR-EHR-CLUSTER.laboratory_test_panel.v0"
          } ],
          "archetype_node_id" : "at0003"
        },
        "archetype_node_id" : "at0002"
      } ],
      "archetype_node_id" : "at0001"
    },
    "archetype_node_id" : "openEHR-EHR-OBSERVATION.laboratory_test_result.v1"
  } ],
  "archetype_node_id" : "openEHR-EHR-COMPOSITION.report-result.v1"
}
@SevKohler SevKohler added the bug Something isn't working label Feb 22, 2024
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