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unit_tests.yml
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name: easyconfigs unit tests
on: [push, pull_request]
permissions:
contents: read # to fetch code (actions/checkout)
concurrency:
group: ${{format('{0}:{1}:{2}', github.repository, github.ref, github.workflow)}}
cancel-in-progress: true
jobs:
test-suite:
runs-on: ubuntu-20.04
strategy:
matrix:
python: [3.6, '3.11']
modules_tool: [Lmod-7.8.22, Lmod-8.6.8]
module_syntax: [Lua, Tcl]
# exclude some configurations: only test Tcl module syntax with Lmod 8.x and Python 3.6
exclude:
- modules_tool: Lmod-7.8.22
module_syntax: Tcl
fail-fast: false
steps:
- uses: actions/checkout@v2
with:
fetch-depth: 0 # Required for git merge-base to work
- name: Cache source files in /tmp/sources
id: cache-sources
uses: actions/cache@v2
with:
path: /tmp/sources
key: eb-sourcepath
- name: set up Python
uses: actions/setup-python@v4
with:
python-version: ${{matrix.python}}
architecture: x64
- name: install OS & Python packages
run: |
# disable apt-get update, we don't really need it,
# and it does more harm than good (it's fairly expensive, and it results in flaky test runs)
# sudo apt-get update
# for modules tool
sudo apt-get install lua5.2 liblua5.2-dev lua-filesystem lua-posix tcl tcl-dev
# fix for lua-posix packaging issue, see https://bugs.launchpad.net/ubuntu/+source/lua-posix/+bug/1752082
# needed for Ubuntu 18.04, but not for Ubuntu 20.04, so skipping symlinking if posix.so already exists
if [ ! -e /usr/lib/x86_64-linux-gnu/lua/5.2/posix.so ] ; then
sudo ln -s /usr/lib/x86_64-linux-gnu/lua/5.2/posix_c.so /usr/lib/x86_64-linux-gnu/lua/5.2/posix.so
fi
# for testing OpenMPI-system*eb we need to have Open MPI installed
sudo apt-get install libopenmpi-dev openmpi-bin
# required for test_dep_graph
pip install pep8 python-graph-core python-graph-dot
- name: install EasyBuild framework
run: |
cd $HOME
# first determine which branch of easybuild-framework repo to install
BRANCH=develop
if [ "x$GITHUB_BASE_REF" = 'xmain' ]; then BRANCH=main; fi
if [ "x$GITHUB_BASE_REF" = 'x4.x' ]; then BRANCH=4.x; fi
echo "Using easybuild-framework branch $BRANCH (\$GITHUB_BASE_REF $GITHUB_BASE_REF)"
git clone -b $BRANCH --depth 10 --single-branch https://github.com/easybuilders/easybuild-framework.git
cd easybuild-framework; git log -n 1; cd -
pip install $PWD/easybuild-framework
git clone -b $BRANCH --depth 10 --single-branch https://github.com/easybuilders/easybuild-easyblocks.git
cd easybuild-easyblocks; git log -n 1; cd -
pip install $PWD/easybuild-easyblocks
- name: install modules tool
run: |
cd $HOME
# use install_eb_dep.sh script provided with easybuild-framework
export INSTALL_DEP=$(which install_eb_dep.sh)
echo "Found install_eb_dep.sh script: $INSTALL_DEP"
# install modules tool
source $INSTALL_DEP ${{matrix.modules_tool}} $HOME
# changes in environment are not passed to other steps, so need to create files...
echo $MOD_INIT > mod_init
echo $PATH > path
if [ ! -z $MODULESHOME ]; then echo $MODULESHOME > moduleshome; fi
- name: run test suite
env:
EB_VERBOSE: 1
EASYBUILD_MODULE_SYNTAX: ${{matrix.module_syntax}}
run: |
# pull in target so we can diff against it to obtain list of touched files
if [ "x$GITHUB_BASE_REF" != 'xmain' ]; then git fetch -v origin ${GITHUB_BASE_REF}:${GITHUB_BASE_REF}; fi
# initialize environment for modules tool
if [ -f $HOME/moduleshome ]; then export MODULESHOME=$(cat $HOME/moduleshome); fi
source $(cat $HOME/mod_init); type module
# make sure 'eb' is available via $PATH, and that $PYTHONPATH is set (some tests expect that);
# also pick up changes to $PATH set by sourcing $MOD_INIT
WORKDIR=$GITHUB_WORKSPACE/easybuild-easyconfigs
export PATH=$WORKDIR/test/bin:$(cat $HOME/path)
export PYTHONPATH=$WORKDIR
# tell EasyBuild which modules tool is available
if [[ ${{matrix.modules_tool}} =~ ^modules-tcl- ]]; then
export EASYBUILD_MODULES_TOOL=EnvironmentModulesTcl
elif [[ ${{matrix.modules_tool}} =~ ^modules-3 ]]; then
export EASYBUILD_MODULES_TOOL=EnvironmentModulesC
elif [[ ${{matrix.modules_tool}} =~ ^modules-4 ]]; then
export EASYBUILD_MODULES_TOOL=EnvironmentModules
else
export EASYBUILD_MODULES_TOOL=Lmod
fi
eb --version
eb --show-config
# gather some useful info on test system
eb --show-system-info
# run test suite
# if tests failed, print error message that is picked up by boegelbot to determine end of test output
python -O -m test.easyconfigs.suite || (echo "ERROR: Not all tests were successful" && exit 1)
unset PYTHONPATH
# install easyconfigs via distribution package
python setup.py sdist > /dev/null
ls dist
pip install dist/easybuild-easyconfigs*tar.gz > /dev/null
# robot-paths value should not be empty, but have an entry that includes easybuild/easyconfigs subdir
echo "eb --show-config"
eb --show-config | tee eb_show_config.out
grep "^robot-paths .*/easybuild/easyconfigs" eb_show_config.out
# check whether some specific easyconfig files are found
echo "eb --search 'TensorFlow-1.14.*.eb'"
eb --search 'TensorFlow-1.14.*.eb' | tee eb_search_TF.out
grep '/TensorFlow-1.14.0-foss-2019a-Python-3.7.2.eb$' eb_search_TF.out
echo "eb --search '^foss-2019b.eb'"
eb --search '^foss-2019b.eb' | tee eb_search_foss.out
grep '/foss-2019b.eb$' eb_search_foss.out
# try installing M4 with system toolchain (requires ConfigureMake easyblock + easyconfig)
# use /tmp/sources because that has cached downloads (see cache step above)
eb --prefix /tmp/$USER/$GITHUB_SHA --sourcepath /tmp/sources M4-1.4.18.eb
test-sdist:
runs-on: ubuntu-20.04
strategy:
matrix:
python: [3.6, '3.11']
steps:
- uses: actions/checkout@v2
- name: set up Python
uses: actions/setup-python@v4
with:
python-version: ${{matrix.python}}
- name: Create source distribution
run: python setup.py sdist
- name: Inspect files included in source distribution
working-directory: dist
run: |
tar xfz easybuild-easyconfigs*tar.gz
cd easybuild-easyconfigs-*/
# .git folder should not be there in source tarball
dot_git_files=$(find . -name .git)
if [ -n "$dot_git_files" ]; then
echo "Found .git folders in source tarball: $dot_git_files" && false
else
echo "No .git folders found in source tarball: OK"
fi