ANTs-2.3.1-foss-2018b-Python-3.6.6.eb

easyblock = 'CMakeMake'

name = 'ANTs'
version = '2.3.1'
versionsuffix = '-Python-%(pyver)s'

homepage = 'http://stnava.github.io/ANTs/'
description = """ANTs extracts information from complex datasets that include imaging. ANTs is useful for managing,
 interpreting and visualizing multidimensional data."""

toolchain = {'name': 'foss', 'version': '2018b'}
toolchainopts = {'pic': True}

source_urls = ['https://github.com/stnava/ANTs/archive/']
sources = ['v%(version)s.tar.gz']
patches = ['ANTs-%(version)s_fix-VTK.patch']
checksums = [
    'c0680feab0ebb85c8cd6685043126666929b35e1cf387a5cc1d3a2d7169bddd3',  # v2.3.1.tar.gz
    '246efcdd6d1e2f213bf327cee3333ec3824e58fd9fd5dbcecdde02e49aeafb20',  # ANTs-2.3.1_fix-VTK.patch
]

builddependencies = [('CMake', '3.12.1')]

dependencies = [
    ('Python', '3.6.6'),
    ('VTK', '8.1.1', versionsuffix),
]

separate_build_dir = True

configopts = '-DBUILD_SHARED_LIBS=ON -DBUILD_TESTING=OFF '
configopts += '-DUSE_VTK=ON -DUSE_SYSTEM_VTK=ON '
configopts += '-DSuperBuild_ANTS_USE_GIT_PROTOCOL=OFF'

skipsteps = ['install']

# need to remove (useless) .git subdirectories to avoid permission denied problems when copying
buildopts = ' && mkdir -p %(installdir)s && (find . -name .git | xargs rm -rfv) && cp -a * %(installdir)s/'

postinstallcmds = ["cp -a %(builddir)s/ANTs-%(version)s/Scripts/* %(installdir)s/bin/"]

sanity_check_paths = {
    'files': ['bin/ANTS', 'bin/antsBrainExtraction.sh'],
    'dirs': ['lib'],
}

modextravars = {'ANTSPATH': '%(installdir)s/bin'}

moduleclass = 'data'