ANTs-2.3.0-foss-2017b-Python-2.7.14.eb

easyblock = 'CMakeMake'

name = 'ANTs'
version = '2.3.0'
versionsuffix = '-Python-%(pyver)s'

homepage = 'http://stnava.github.io/ANTs/'
description = """ANTs extracts information from complex datasets that include imaging. ANTs is useful for managing,
 interpreting and visualizing multidimensional data."""

toolchain = {'name': 'foss', 'version': '2017b'}
toolchainopts = {'pic': True}

source_urls = ['https://github.com/stnava/ANTs/archive/']
sources = ['v%(version)s.tar.gz']
checksums = ['34bdeaa3bafc2e115e89acaae5733445e4b29f8fb98110067a187b036cb03057']

builddependencies = [('CMake', '3.12.1')]

dependencies = [
    ('Python', '2.7.14'),
    ('VTK', '8.0.1', versionsuffix),
]

separate_build_dir = True

configopts = '-DBUILD_SHARED_LIBS=ON -DBUILD_TESTING=OFF '
configopts += '-DUSE_VTK=ON -DUSE_SYSTEM_VTK=ON '
configopts += '-DSuperBuild_ANTS_USE_GIT_PROTOCOL=OFF'

skipsteps = ['install']

# need to ensure user has write permissions on all files, to avoid permission denied problems when copying
buildopts = ' && mkdir -p %(installdir)s && chmod -R u+w . && cp -a * %(installdir)s/'

postinstallcmds = ["cp -a %(builddir)s/ANTs-%(version)s/Scripts/* %(installdir)s/bin/"]

sanity_check_paths = {
    'files': ['bin/ANTS', 'bin/antsBrainExtraction.sh'],
    'dirs': ['lib'],
}

modextravars = {'ANTSPATH': '%(installdir)s/bin'}

moduleclass = 'data'