{"payload":{"feedbackUrl":"https://github.com/orgs/community/discussions/53140","repo":{"id":316042728,"defaultBranch":"main","name":"CATO","ownerLogin":"dutchconnectomelab","currentUserCanPush":false,"isFork":false,"isEmpty":false,"createdAt":"2020-11-25T20:06:32.000Z","ownerAvatar":"https://avatars.githubusercontent.com/u/72792694?v=4","public":true,"private":false,"isOrgOwned":true},"refInfo":{"name":"","listCacheKey":"v0:1712054938.0","currentOid":""},"activityList":{"items":[{"before":null,"after":"972fadbd40c83c1ee9f4916f7fa9a01f4082d781","ref":"refs/heads/fix-economo-roi-list","pushedAt":"2024-04-02T10:48:58.000Z","pushType":"branch_creation","commitsCount":0,"pusher":{"login":"koenhelwegen","name":"Koen Helwegen","path":"/koenhelwegen","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/29484762?s=80&v=4"},"commit":{"message":"Update ROIs_economo.txt\n\nRegion 4 was included by accident","shortMessageHtmlLink":"Update ROIs_economo.txt"}},{"before":"9c4c99b1589d07939d51cb7b7d69142b54bb89b3","after":"51003584e1d7925e018ba24802ac073866eb0228","ref":"refs/heads/acqFile","pushedAt":"2024-02-28T09:53:05.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"tombresser","name":"Tom","path":"/tombresser","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/36665840?s=80&v=4"},"commit":{"message":"add synb0File to default config","shortMessageHtmlLink":"add synb0File to default config"}},{"before":"22b5107d091042fee78de5db41e0812ff1da8598","after":"9c4c99b1589d07939d51cb7b7d69142b54bb89b3","ref":"refs/heads/acqFile","pushedAt":"2024-02-27T12:08:53.000Z","pushType":"push","commitsCount":6,"pusher":{"login":"tombresser","name":"Tom","path":"/tombresser","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/36665840?s=80&v=4"},"commit":{"message":"If index and acqp are in a different location, make a copy to the CATO output dir independently from each other","shortMessageHtmlLink":"If index and acqp are in a different location, make a copy to the CAT…"}},{"before":null,"after":"22b5107d091042fee78de5db41e0812ff1da8598","ref":"refs/heads/acqFile","pushedAt":"2024-02-16T15:44:10.000Z","pushType":"branch_creation","commitsCount":0,"pusher":{"login":"tombresser","name":"Tom","path":"/tombresser","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/36665840?s=80&v=4"},"commit":{"message":"accept acqFile as input\n\nOnly generate the acqpFile if it does not exists.\nIf cqpFile exists, read the file and check if it has the required 4 columns.","shortMessageHtmlLink":"accept acqFile as input"}},{"before":null,"after":"7205fa60882af469ba06c1a10087d32a41469bf4","ref":"refs/heads/maintainer-notification","pushedAt":"2024-01-12T13:32:15.000Z","pushType":"branch_creation","commitsCount":0,"pusher":{"login":"koenhelwegen","name":"Koen Helwegen","path":"/koenhelwegen","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/29484762?s=80&v=4"},"commit":{"message":"Update README.md","shortMessageHtmlLink":"Update README.md"}},{"before":"a829240510e54b24f3ae60f8c43d20649ec4fd75","after":null,"ref":"refs/heads/fix-multiple-reconstruction-steps","pushedAt":"2023-11-21T10:03:44.000Z","pushType":"branch_deletion","commitsCount":0,"pusher":{"login":"koenhelwegen","name":"Koen Helwegen","path":"/koenhelwegen","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/29484762?s=80&v=4"}},{"before":null,"after":"a829240510e54b24f3ae60f8c43d20649ec4fd75","ref":"refs/heads/fix-multiple-reconstruction-steps","pushedAt":"2023-11-21T08:39:34.000Z","pushType":"branch_creation","commitsCount":0,"pusher":{"login":"koenhelwegen","name":"Koen Helwegen","path":"/koenhelwegen","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/29484762?s=80&v=4"},"commit":{"message":"Update parseVarargin.m","shortMessageHtmlLink":"Update parseVarargin.m"}},{"before":"1d17bf885ce519ea299ff9325adf72470f0f827a","after":null,"ref":"refs/heads/fix-vox2ras-orientation","pushedAt":"2023-04-19T11:36:43.000Z","pushType":"branch_deletion","commitsCount":0,"pusher":{"login":"SiemondeLange","name":"Siemon de Lange","path":"/SiemondeLange","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/178523?s=80&v=4"}},{"before":"f7a54e29638efc21edee9288ce8def00728b5d81","after":"41a3ae563441a365d78db85eca180e1d1a4f10d8","ref":"refs/heads/main","pushedAt":"2023-04-19T11:36:38.000Z","pushType":"pr_merge","commitsCount":1,"pusher":{"login":"SiemondeLange","name":"Siemon de Lange","path":"/SiemondeLange","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/178523?s=80&v=4"},"commit":{"message":"Add compatibility for complex vox2ras matrices (#33)\n\nThe previous implementation assumed a single term per column in the vox2ras matrix of the segmentationFile NIfTI. However, if a vox2ras matrix with multiple terms was used, CATO would throw an error. This update adds compatibility for such complex vox2ras matrices. Additionally, the tests have been updated to include these complex vox2ras matrices (with mri_info as reference).","shortMessageHtmlLink":"Add compatibility for complex vox2ras matrices (#33)"}},{"before":"df3ade50ccd7f2891553896553237969871b3178","after":"f7a54e29638efc21edee9288ce8def00728b5d81","ref":"refs/heads/main","pushedAt":"2023-04-19T11:33:43.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"SiemondeLange","name":"Siemon de Lange","path":"/SiemondeLange","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/178523?s=80&v=4"},"commit":{"message":"Update reference to paper\n\nUpdate the reference from the preprint on bioRxiv to the printed version in NeuroImage.","shortMessageHtmlLink":"Update reference to paper"}},{"before":"ccb2cba6f1e943eb6ea07ccfad4751db37a3460a","after":"425b83cee99a037598537b6c3d7e30973efceabb","ref":"refs/heads/fc-truncate-timeseries","pushedAt":"2023-03-21T13:33:36.000Z","pushType":"force_push","commitsCount":0,"pusher":{"login":"koenhelwegen","name":"Koen Helwegen","path":"/koenhelwegen","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/29484762?s=80&v=4"},"commit":{"message":"add option to truncate timeseries","shortMessageHtmlLink":"add option to truncate timeseries"}},{"before":"020e10b66a4bc2c0a2421357dc53655246a603fd","after":"ccb2cba6f1e943eb6ea07ccfad4751db37a3460a","ref":"refs/heads/fc-truncate-timeseries","pushedAt":"2023-03-21T13:32:59.000Z","pushType":"force_push","commitsCount":0,"pusher":{"login":"koenhelwegen","name":"Koen Helwegen","path":"/koenhelwegen","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/29484762?s=80&v=4"},"commit":{"message":"add option to truncate timeseries","shortMessageHtmlLink":"add option to truncate timeseries"}},{"before":null,"after":"020e10b66a4bc2c0a2421357dc53655246a603fd","ref":"refs/heads/fc-truncate-timeseries","pushedAt":"2023-03-21T13:30:30.000Z","pushType":"branch_creation","commitsCount":0,"pusher":{"login":"koenhelwegen","name":"Koen Helwegen","path":"/koenhelwegen","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/29484762?s=80&v=4"},"commit":{"message":"add option to truncate timeseries","shortMessageHtmlLink":"add option to truncate timeseries"}},{"before":null,"after":"afc9b7d7dfb2a2938e1115a93afc6427d8e36cf4","ref":"refs/heads/group-mode","pushedAt":"2023-03-21T12:48:45.000Z","pushType":"branch_creation","commitsCount":0,"pusher":{"login":"koenhelwegen","name":"Koen Helwegen","path":"/koenhelwegen","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/29484762?s=80&v=4"},"commit":{"message":"add group mode to functional pipeline","shortMessageHtmlLink":"add group mode to functional pipeline"}},{"before":null,"after":"1d17bf885ce519ea299ff9325adf72470f0f827a","ref":"refs/heads/fix-vox2ras-orientation","pushedAt":"2023-03-20T13:00:21.526Z","pushType":"branch_creation","commitsCount":0,"pusher":{"login":"SiemondeLange","name":"Siemon de Lange","path":"/SiemondeLange","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/178523?s=80&v=4"},"commit":{"message":"Add compatibility for complex vox2ras matrices\n\nThe previous implementation assumed a single term per column in the vox2ras matrix of the segmentationFile NIfTI. However, if a vox2ras matrix with multiple terms was used, CATO would throw an error. This update adds compatibility for such complex vox2ras matrices. Additionally, the tests have been updated to include these complex vox2ras matrices (with mri_info as reference).","shortMessageHtmlLink":"Add compatibility for complex vox2ras matrices"}},{"before":"1c0575e0784e341b1c33cabc8c50ba8a34d2d86f","after":null,"ref":"refs/heads/feature-improve-error-messages","pushedAt":"2023-03-17T10:17:42.608Z","pushType":"branch_deletion","commitsCount":0,"pusher":{"login":"SiemondeLange","name":"Siemon de Lange","path":"/SiemondeLange","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/178523?s=80&v=4"}},{"before":"40a7e8f763885e4530f1044f251bfce8beda509f","after":"df3ade50ccd7f2891553896553237969871b3178","ref":"refs/heads/main","pushedAt":"2023-03-17T10:17:32.487Z","pushType":"pr_merge","commitsCount":1,"pusher":{"login":"SiemondeLange","name":"Siemon de Lange","path":"/SiemondeLange","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/178523?s=80&v=4"},"commit":{"message":"Add error message when configFile is not writeable (#32)\n\nAdd error message when configFile is not writable","shortMessageHtmlLink":"Add error message when configFile is not writeable (#32)"}},{"before":"2506a34a72c2256b6726c1be0551adc8938067e0","after":"1c0575e0784e341b1c33cabc8c50ba8a34d2d86f","ref":"refs/heads/feature-improve-error-messages","pushedAt":"2023-03-17T10:13:51.170Z","pushType":"push","commitsCount":1,"pusher":{"login":"SiemondeLange","name":"Siemon de Lange","path":"/SiemondeLange","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/178523?s=80&v=4"},"commit":{"message":"Generalize error message\n\nDo not specify that CATO cannot write to the configuration file, as this sometimes refers to the raw configuration file or the computed configuration file.","shortMessageHtmlLink":"Generalize error message"}},{"before":null,"after":"2506a34a72c2256b6726c1be0551adc8938067e0","ref":"refs/heads/feature-improve-error-messages","pushedAt":"2023-03-16T20:41:59.913Z","pushType":"branch_creation","commitsCount":0,"pusher":{"login":"SiemondeLange","name":"Siemon de Lange","path":"/SiemondeLange","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/178523?s=80&v=4"},"commit":{"message":"Add error message when configFile is not writable","shortMessageHtmlLink":"Add error message when configFile is not writable"}},{"before":"1849b254efb31919628bfae8906a4f75bd3bc9b0","after":null,"ref":"refs/heads/feature-COMMIT-filtering","pushedAt":"2023-03-09T15:39:50.173Z","pushType":"branch_deletion","commitsCount":0,"pusher":{"login":"SiemondeLange","name":"Siemon de Lange","path":"/SiemondeLange","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/178523?s=80&v=4"}},{"before":"f136c856cf7472fda7615d6eb19f7e2a0375bcae","after":"40a7e8f763885e4530f1044f251bfce8beda509f","ref":"refs/heads/main","pushedAt":"2023-03-09T15:39:42.831Z","pushType":"pr_merge","commitsCount":1,"pusher":{"login":"SiemondeLange","name":"Siemon de Lange","path":"/SiemondeLange","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/178523?s=80&v=4"},"commit":{"message":"Add pipeline step for COMMIT streamline filtering (#30)\n\nThis commit adds a new post-processing pipeline add-on to the structural pipeline, which filters streamlines in the fiber cloud using COMMIT2 and reconstructs connectivity matrices from the filtered fiber cloud. The current implementation is based on the basic example provided on the COMMIT2 wiki.","shortMessageHtmlLink":"Add pipeline step for COMMIT streamline filtering (#30)"}},{"before":"12831b9483187e7b6b941f138117e17971797b31","after":"1849b254efb31919628bfae8906a4f75bd3bc9b0","ref":"refs/heads/feature-COMMIT-filtering","pushedAt":"2023-03-09T11:54:36.824Z","pushType":"push","commitsCount":1,"pusher":{"login":"SiemondeLange","name":"Siemon de Lange","path":"/SiemondeLange","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/178523?s=80&v=4"},"commit":{"message":"Add `wmMaskFile` parameter to documentation","shortMessageHtmlLink":"Add wmMaskFile parameter to documentation"}},{"before":"b501bfa57b7717d04b28425178a41fa3e001caf2","after":"12831b9483187e7b6b941f138117e17971797b31","ref":"refs/heads/feature-COMMIT-filtering","pushedAt":"2023-03-09T10:48:17.454Z","pushType":"push","commitsCount":1,"pusher":{"login":"SiemondeLange","name":"Siemon de Lange","path":"/SiemondeLange","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/178523?s=80&v=4"},"commit":{"message":"Move COMMIT-Filter to addons directory","shortMessageHtmlLink":"Move COMMIT-Filter to addons directory"}},{"before":"90215dc571c5bb7cc8f9abd2b3172e8c2458c1c6","after":"b501bfa57b7717d04b28425178a41fa3e001caf2","ref":"refs/heads/feature-COMMIT-filtering","pushedAt":"2023-03-08T13:18:47.572Z","pushType":"push","commitsCount":1,"pusher":{"login":"SiemondeLange","name":"Siemon de Lange","path":"/SiemondeLange","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/178523?s=80&v=4"},"commit":{"message":"Update python code style\n\nUpdated python code style using black, isort and flake8 (ignoring E501).","shortMessageHtmlLink":"Update python code style"}},{"before":"500aa73e82079af7fa9518e1ab32003a716c7bab","after":"90215dc571c5bb7cc8f9abd2b3172e8c2458c1c6","ref":"refs/heads/feature-COMMIT-filtering","pushedAt":"2023-03-08T12:51:44.284Z","pushType":"push","commitsCount":2,"pusher":{"login":"SiemondeLange","name":"Siemon de Lange","path":"/SiemondeLange","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/178523?s=80&v=4"},"commit":{"message":"Merge branch 'main' into feature-COMMIT-filtering","shortMessageHtmlLink":"Merge branch 'main' into feature-COMMIT-filtering"}},{"before":"c113975627b3be1f71d611e3d92956522c10892f","after":"500aa73e82079af7fa9518e1ab32003a716c7bab","ref":"refs/heads/feature-COMMIT-filtering","pushedAt":"2023-03-08T11:22:41.664Z","pushType":"push","commitsCount":1,"pusher":{"login":"SiemondeLange","name":"Siemon de Lange","path":"/SiemondeLange","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/178523?s=80&v=4"},"commit":{"message":"Add setupPythonScript parameter\n\nInstead of specifying the location of the python binary in the `pythonInterpreter` parameter, users can now specify a start-up script with the `pythonInterpreter` parameter that can activate their desired environment. This change has the benefit that the COMMIT script also works when no startup script is provided and that it is more in line with the usual usage of activating Anaconda environments from the command line.","shortMessageHtmlLink":"Add setupPythonScript parameter"}}],"hasNextPage":false,"hasPreviousPage":false,"activityType":"all","actor":null,"timePeriod":"all","sort":"DESC","perPage":30,"cursor":"djE6ks8AAAAEJWlMOwA","startCursor":null,"endCursor":null}},"title":"Activity · dutchconnectomelab/CATO"}