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"path" option for Blast calls is non-functional #29

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kushtun opened this issue Nov 3, 2021 · 1 comment
Open

"path" option for Blast calls is non-functional #29

kushtun opened this issue Nov 3, 2021 · 1 comment

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@kushtun
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kushtun commented Nov 3, 2021

Trying out the orthologr package on a system where I cannot do root, either pw or sudo, etc.

Installed blast and others to ~/bin

In the docs, it purports to support this via the path option in the call to blast(), but when I run in the debugger, I see that the option does not seem to be passed to the is_installed_blast() call.

So, I cannot run Blast -- need to have that functionality of the path option.

@HajkD
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HajkD commented Nov 8, 2021

Dear @kushtun

Thank you so much for catching this bug! Your debugging is truly appreciated!

I now fixed the issue and added the path argument to is_installed_blast().

Does it work for you now?

I hope this helps!

Many thanks,
Hajk

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