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It would be very useful to have annotations for KEGG subsystems and genes assigned by the ModelPolisher. This would save a lot of time and work during model curation.
To obtain genes' annotations one of the following methods could be used:
the GenBank file combined with old/new locus tags
the NCBI API
the KEGG API and the conv operation
The text was updated successfully, but these errors were encountered:
NantiaL
changed the title
Add KEGG pathways and gene annotations
Add annotations for KEGG pathways and genes
May 3, 2022
Just to comment on this. KEGG is basically dead for many researchers since moving behind a non-open license. This makes it basically impossible to work with KEGG data and annotations. Many researchers dropped KEGG in recent years (as did I). I would not recommend to put any effort in supporting KEGG, but instead use open alternatives such as reactome.
It would be very useful to have annotations for KEGG subsystems and genes assigned by the ModelPolisher. This would save a lot of time and work during model curation.
To obtain genes' annotations one of the following methods could be used:
conv
operationThe text was updated successfully, but these errors were encountered: