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README
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README
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Map analysis code
=================
This directory contains the code for Willshaw &al. (2013) "Analysis of
local and global topographic order in mouse retinocollicular maps".
Each directory contains the following:
* lib: The core code.
* cang: Code specific to analysis of the data of Cang &al (2008). To
generate figures, type "figures" at Matlab prompt. To generate a
CSV file of statistics ("summary_stats.csv"), type
"get_summary_stats([])".
* misc: An R script to extract statistics presented in the paper from
the "summary_stats.csv" file generated as explained above. To run
the script, start R and type 'source("analyse-summary-stats.R")'.
* old: Redundant code - much can probably be dispensed with.
Git tags
========
adrianna-may-2011 - The files as handed over by Adrianna
adrianna-final-cleaned - The files minus all the derived (pdf, xls,
eps) files
adrianna-dw-changes - David Willshaw's changes to Adrianna's
existing files
pre-directory-reorg - The state of code just before reorganisation
into lib and cang directories
Git branches (only master has been pushed to GitHub)
====================================================
master - the main branch
adrianna-final - files as Adrianna left them, complete wtith figures
dw-figs-for-paper - Import of all M-files in David's
Computing/Matlab/MapPrecision11/Adriannas_legacy/Figs_for_paper
directory
dw-figs-for-paper-clean
- Cleaned up version of above
merge-sim-exp - Branch in which work on merging experiment- and
simulation-specific code was carried out