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HealthOmics module in "Play" tools #563

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dlpzx opened this issue Jul 11, 2023 · 3 comments · May be fixed by #954
Open

HealthOmics module in "Play" tools #563

dlpzx opened this issue Jul 11, 2023 · 3 comments · May be fixed by #954
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@ironspur5
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effort: large priority: medium status: in-progress This issue has been picked and is being implemented type: newfeature New feature request
Projects
Data.all Roadmap v2.6.0

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@dlpzx
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dlpzx commented Jul 11, 2023 •
edited by anmolsgandhi

I want to use HealthOmics in a more ready-to-use solution and use it alongside data.all as a new "Play" tool

Describe alternatives you've considered
Credits to @ironspur5 that started the design drafts. I added some comments here:

image

Additional context
It is designed to be part of the modularization repo structure
@dlpzx dlpzx added status: in-progress This issue has been picked and is being implemented type: newfeature New feature request priority: medium labels Jul 11, 2023
@dlpzx dlpzx added this to Backlog in Data.all Backlog via automation Jul 11, 2023
@dlpzx
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dlpzx commented Jul 11, 2023

@ironspur5 I just rebased the branch and did some changes to it that will help you in implementing the above design

@ironspur5 ironspur5 self-assigned this Jul 11, 2023
@anmolsgandhi anmolsgandhi added this to the v2.2.0 milestone Sep 8, 2023
@anmolsgandhi anmolsgandhi moved this from Backlog to To do in Data.all Backlog Sep 10, 2023
@zsaltys
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zsaltys commented Oct 4, 2023

@dlpzx could we add more information here what is Omics, what problem it helps solve etc?

@anmolsgandhi anmolsgandhi removed this from the v2.2.0 milestone Oct 23, 2023
@anmolsgandhi anmolsgandhi removed this from To do in Data.all Backlog Dec 12, 2023
@ironspur5
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Hello @zsaltys Omics, now called HealthOmics, is an AWS service that helps users such as bioinformaticians and/or researchers to process and generate insights from genomics and other biological data stored in the cloud. Raw genomic data can be sent to a HealthOmics managed workflow and then stored in a manageable format for querying/visualizing/sharing. For health/life sciences Data.all users, this would a welcome feature, similar to the existing integration with SageMaker Jupyter notebooks.

@anmolsgandhi anmolsgandhi changed the title Omics module in "Play" tools HealthOmics module in "Play" tools Jan 8, 2024
@anmolsgandhi anmolsgandhi added this to Roadmap in Data.all Roadmap Jan 8, 2024
@ironspur5 ironspur5 linked a pull request Jan 9, 2024 that will close this issue
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@ironspur5 ironspur5 linked a pull request Jan 9, 2024 that will close this issue
Adding AWS HealthOmics as a Module in "Play" tools #954
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@SofiaSazonova SofiaSazonova added this to the v2.4.0 milestone Apr 3, 2024
@SofiaSazonova SofiaSazonova added this to To do in v2.4.0 via automation Apr 3, 2024
@SofiaSazonova SofiaSazonova moved this from To do to In progress in v2.4.0 Apr 3, 2024
@SofiaSazonova SofiaSazonova removed this from In progress in v2.4.0 Apr 8, 2024
@dlpzx dlpzx removed this from the v2.4.0 milestone Apr 9, 2024
@dlpzx dlpzx added this to To do in v2.6.0 via automation Apr 9, 2024
@dlpzx dlpzx moved this from To do to In progress in v2.6.0 Apr 9, 2024
@dlpzx dlpzx mentioned this issue Apr 23, 2024
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@ironspur5 ironspur5

Labels
effort: large priority: medium status: in-progress This issue has been picked and is being implemented type: newfeature New feature request
Projects
Data.all Roadmap
Roadmap
v2.6.0
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Adding AWS HealthOmics as a Module in "Play" tools ironspur5/dataall-modularized-healthomics
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@SofiaSazonova @zsaltys @ironspur5 @dlpzx @anmolsgandhi