plantcv-workflow.py

[israel961214]

Hi, sorry if you don't understand me well, but I don't speak English very well.

I am trying to follow your PlantCV workshop @ NAPPN2021 video, but I have a problem in Workflow Parallelization, when I run the terminal I get the following error:
plantcv-workflow.py : The term 'plantcv-workflow.py' is not recognized as the name of a cmdlet, function, script file.
script or executable program. Check if you typed the name correctly, or if you included a path, check
that the path is correct and try again.

It is worth mentioning that I am working on Anaconda navigator with Jupyter.
I follow the instructions of its official documentation to install plantcv but the truth is that I am not very sure if I really installed it correctly.

I would like if you could tell me what I'm doing wrong and how I can correct it

[nfahlgren]

Hi @israel961214, if you are on a Windows operating system, my understanding from a colleague is that you have to run plantcv-workflow.py like this:

python.exe %CONDA_PREFIX%\Scripts\plantcv-workflow.py

They added some additional details to our documentation here: https://plantcv.readthedocs.io/en/stable/pipeline_parallel/#example-batch-script-windows

Let us know if that's not the issue!

[israel961214]

hello, good afternoon, indeed I am on a windows system, I already did it with the command you mention, but I still have the same error.
I do it from your repository as you mention in your video and I don't have any problem, but I do it locally and it gives me the aforementioned error. I attach images to know if I am doing something wrong or how it can be solved.

Thanks in advance for your response and support.

![2] (https://user-images.githubusercontent.com/104180148/174162859-2ff4f717-8187-4cc3-a453-2e2aa5dcbd16.PNG)

[nfahlgren]

Looking at what is in our documentation, I wonder if Scripts is incorrect. Maybe this works?

python.exe %CONDA_PREFIX%\bin\plantcv-workflow.py

[israel961214]

Hello, I tried it with the new command but it continues to show an error. Looking at the documentation, if it appears with Scripts, change it as indicated by bin, but the attached image does not work.

I enter the code when starting the terminal and also locating myself in the repository path and the same thing comes out, but that is a doubt that I have if it is located in the repository or it does not matter?

I really don't understand why it marks that error

[israel961214]

Hello @nfahlgren , good afternoon, talking with some colleagues who had already used anaconda, they explained some things to me and I was able to find my error when executing the commands, thank you very much for your help and your answers.

[nfahlgren]

Awesome, thanks @israel961214!