Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

classoption "jou" returns "LaTeX Error: Unknown option 'keeplastbox' for package 'flushend'." #505

Open
rbcavanaugh opened this issue Jan 3, 2022 · 12 comments

Comments

@rbcavanaugh
Copy link

Apologies, I have been looking through past issues and working through .tex files but I don't know enough about LaTeX to resolve this on my own. I recently upgraded R and several packages and am now getting this error when trying to compile any papaja documents with classoption: "jou." "LaTeX Error: Unknown option keeplastbox' for package flushend'."

As a sanity check, I simply tried to run the default template with and without any content, still receiving the above error. I'm not sure what else would help reproduce this error. My sessionInfo() is below.

My relatively naive best guess is that the flushend package was recently re-written (v4) and may no longer have this keeplastbox option, which could be used by one of the papaja or latex packages.

Thanks for a wonderful package. Apologies if this is a simple issue.

> sessioninfo::session_info()
─ Session info ────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────
 setting  value
 version  R version 4.1.2 (2021-11-01)
 os       macOS Big Sur 11.6
 system   x86_64, darwin17.0
 ui       RStudio
 language (EN)
 collate  en_US.UTF-8
 ctype    en_US.UTF-8
 tz       America/New_York
 date     2022-01-03
 rstudio  1.4.1717 Juliet Rose (desktop)
 pandoc   2.14.1 @ /usr/local/bin/ (via rmarkdown)

─ Packages ────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────
 package     * version    date (UTC) lib source
 assertthat    0.2.1      2019-03-21 [1] CRAN (R 4.1.0)
 cachem        1.0.6      2021-08-19 [1] CRAN (R 4.1.0)
 callr         3.7.0      2021-04-20 [1] CRAN (R 4.1.0)
 cli           3.1.0      2021-10-27 [1] CRAN (R 4.1.0)
 crayon        1.4.2      2021-10-29 [1] CRAN (R 4.1.0)
 DBI           1.1.1      2021-01-15 [1] CRAN (R 4.1.0)
 desc          1.4.0      2021-09-28 [1] CRAN (R 4.1.0)
 devtools    * 2.4.3      2021-11-30 [1] CRAN (R 4.1.0)
 digest        0.6.29     2021-12-01 [1] CRAN (R 4.1.0)
 dplyr         1.0.7      2021-06-18 [1] CRAN (R 4.1.0)
 ellipsis      0.3.2      2021-04-29 [1] CRAN (R 4.1.0)
 evaluate      0.14       2019-05-28 [1] CRAN (R 4.1.0)
 fansi         0.5.0      2021-05-25 [1] CRAN (R 4.1.0)
 fastmap       1.1.0      2021-01-25 [1] CRAN (R 4.1.0)
 fs            1.5.1      2021-11-30 [1] CRAN (R 4.1.0)
 generics      0.1.1      2021-10-25 [1] CRAN (R 4.1.0)
 glue          1.5.1      2021-11-30 [1] CRAN (R 4.1.0)
 htmltools     0.5.2      2021-08-25 [1] CRAN (R 4.1.0)
 knitr         1.36       2021-09-29 [1] CRAN (R 4.1.0)
 lifecycle     1.0.1      2021-09-24 [1] CRAN (R 4.1.0)
 magrittr      2.0.1      2020-11-17 [1] CRAN (R 4.1.0)
 memoise       2.0.1      2021-11-26 [1] CRAN (R 4.1.0)
 papaja        0.1.0.9997 2022-01-03 [1] Github (crsh/papaja@a231c36)
 pillar        1.6.4      2021-10-18 [1] CRAN (R 4.1.0)
 pkgbuild      1.2.1      2021-11-30 [1] CRAN (R 4.1.0)
 pkgconfig     2.0.3      2019-09-22 [1] CRAN (R 4.1.0)
 pkgload       1.2.4      2021-11-30 [1] CRAN (R 4.1.0)
 prettyunits   1.1.1      2020-01-24 [1] CRAN (R 4.1.0)
 processx      3.5.2      2021-04-30 [1] CRAN (R 4.1.0)
 ps            1.6.0      2021-02-28 [1] CRAN (R 4.1.0)
 purrr         0.3.4      2020-04-17 [1] CRAN (R 4.1.0)
 R6            2.5.1      2021-08-19 [1] CRAN (R 4.1.0)
 remotes       2.4.2      2021-11-30 [1] CRAN (R 4.1.0)
 rlang         0.4.12     2021-10-18 [1] CRAN (R 4.1.0)
 rmarkdown     2.11       2021-09-14 [1] CRAN (R 4.1.2)
 rprojroot     2.0.2      2020-11-15 [1] CRAN (R 4.1.0)
 rstudioapi    0.13       2020-11-12 [1] CRAN (R 4.1.0)
 sessioninfo   1.2.2      2021-12-06 [1] CRAN (R 4.1.2)
 testthat      3.1.1      2021-12-03 [1] CRAN (R 4.1.0)
 tibble        3.1.6      2021-11-07 [1] CRAN (R 4.1.0)
 tidyr         1.1.4      2021-09-27 [1] CRAN (R 4.1.0)
 tidyselect    1.1.1      2021-04-30 [1] CRAN (R 4.1.0)
 tinytex     * 0.35       2021-11-04 [1] CRAN (R 4.1.0)
 usethis     * 2.1.3      2021-10-27 [1] CRAN (R 4.1.0)
 utf8          1.2.2      2021-07-24 [1] CRAN (R 4.1.0)
 vctrs         0.3.8      2021-04-29 [1] CRAN (R 4.1.0)
 withr         2.4.3      2021-11-30 [1] CRAN (R 4.1.0)
 xfun          0.29       2021-12-14 [1] CRAN (R 4.1.0)
 yaml          2.2.1      2020-02-01 [1] CRAN (R 4.1.0)

 [1] /Library/Frameworks/R.framework/Versions/4.1/Resources/library
@rbcavanaugh rbcavanaugh changed the title classoption "jou" returns "LaTeX Error: Unknown option keeplastbox' for package flushend'." classoption "jou" returns "LaTeX Error: Unknown option 'keeplastbox' for package 'flushend'." Jan 3, 2022
@crsh
Copy link
Owner

crsh commented Jan 5, 2022

Hi Rob, thanks for reaching out. I think you are right in that the keeplastbox option was removed in the most recent release of flushend (see diff). I don't think I load this package anywhere intentionally. Could you provide me with a minimal reproducible example, so I can investigate further?

@rbcavanaugh
Copy link
Author

rbcavanaugh commented Jan 5, 2022

Sure - just as simple as the template but replacing "man" for "jou" (pared down a bit for readability here...). For what it's worth, I couldn't find anywhere it was explicitly loaded in the .tex output file either. I did also try reinstalling tinytex which didn't help either.

---
title             : "The title"
shorttitle        : "Title"

author: 
  - name          : "First Author"
    affiliation   : "1"
    corresponding : yes    # Define only one corresponding author

affiliation:
  - id            : "1"
    institution   : "Wilhelm-Wundt-University"

authornote: |
  Add complete departmental affiliations for each author here. Each new line herein must be indented, like this line.
  Enter author note here.

abstract: |
  One or two sentences providing a **basic introduction** to the field,  comprehensible to a scientist in any discipline...
  
keywords          : "keywords"
wordcount         : "X"

bibliography      : ["r-references.bib"]

floatsintext      : no
figurelist        : no
tablelist         : no
footnotelist      : no
linenumbers       : yes
mask              : no
draft             : no

documentclass     : "apa6"
classoption       : "jou"
output            : papaja::apa6_pdf
---

```{r setup, include = FALSE}
library("papaja")
r_refs("r-references.bib")
```

content
output file: test.knit.md

1 words in text body
0 words in reference section

! LaTeX Error: Unknown option `keeplastbox' for package `flushend'.

Error: LaTeX failed to compile test.tex. See https://yihui.org/tinytex/r/#debugging for debugging tips. See test.log for more info.

@crsh
Copy link
Owner

crsh commented Jan 7, 2022

I can't seem to reproduce the error. I'm using the latest development version of papaja (remotes::install_github("crsh/papaja@devel")), the latest version of tinytex (tinytex::reinstall_tinytex()), and pandoc version 2.16.2 (rmarkdown::pandoc_version()). Is this comparable to your setup? @mariusbarth can you reproduce this?

@rbcavanaugh
Copy link
Author

Well that is encouraging that it perhaps is just something about my setup. I'll try a clean uninstall/reinstall of everything and see if its resolved. TBD

@mariusbarth
Copy link
Collaborator

I also just tried to reproduce and with the provided code, a pdf is knitted that looks just as expected. I tried both with a system installation of Texlive and with tinytex (I installed the newest version of tinytex). my pandoc is 2.14.0.3

@crsh
Copy link
Owner

crsh commented Jan 10, 2022

I found that the apa6 class loads flushend with the keeplastbox. So I think this is something that should be raised with Brian Beitzel. apa7 was recently updated to omit that option.

@Lakens
Copy link

Lakens commented Jan 21, 2022

Just here to say I have the same error. It is related to the installation, because the same file works fine on my previous machine. I am running the latest version of windows. Get the same "! LaTeX Error: Unknown option keeplastbox' for package flushend'." error. Have not yet been able to fix it. Setting it to "man" instead of "jou" makes it render.

@mvuorre
Copy link

mvuorre commented Jun 23, 2022

Just posting here to note that I am getting the same error. Trying to knit the provided .Rmd template but setting classoption : "jou" results in "! LaTeX Error: Unknown option keeplastbox' for package flushend'."

tex log

This is pdfTeX, Version 3.141592653-2.6-1.40.24 (TeX Live 2022) (preloaded format=pdflatex 2022.6.23) 23 JUN 2022 16:58
entering extended mode
restricted \write18 enabled.
%&-line parsing enabled.
**ms.tex
(./ms.tex
LaTeX2e <2022-06-01> patch level 2
L3 programming layer <2022-06-16> (/usr/local/texlive/2022/texmf-dist/tex/latex
/apa6/apa6.cls
Document Class: apa6 2020/01/13 v2.34 APA formatting (6th edition)
(/usr/local/texlive/2022/texmf-dist/tex/latex/base/article.cls
Document Class: article 2021/10/04 v1.4n Standard LaTeX document class
(/usr/local/texlive/2022/texmf-dist/tex/latex/base/size10.clo
File: size10.clo 2021/10/04 v1.4n Standard LaTeX file (size option)
)
\c@part=\count185
\c@section=\count186
\c@subsection=\count187
\c@subsubsection=\count188
\c@paragraph=\count189
\c@subparagraph=\count190
\c@figure=\count191
\c@table=\count192
\abovecaptionskip=\skip47
\belowcaptionskip=\skip48
\bibindent=\dimen138
) (/usr/local/texlive/2022/texmf-dist/tex/latex/etoolbox/etoolbox.sty
Package: etoolbox 2020/10/05 v2.5k e-TeX tools for LaTeX (JAW)
\etb@tempcnta=\count193
)
Class apa6 Info: No bibliography package was specified; defaulting to (but not
loading) Biblatex on input line 213.
(/usr/local/texlive/2022/texmf-dist/tex/latex/lm/lmodern.sty
Package: lmodern 2015/05/01 v1.6.1 Latin Modern Fonts
LaTeX Font Info: Overwriting symbol font operators' in version normal'
(Font) OT1/cmr/m/n --> OT1/lmr/m/n on input line 22.
LaTeX Font Info: Overwriting symbol font letters' in version normal'
(Font) OML/cmm/m/it --> OML/lmm/m/it on input line 23.
LaTeX Font Info: Overwriting symbol font symbols' in version normal'
(Font) OMS/cmsy/m/n --> OMS/lmsy/m/n on input line 24.
LaTeX Font Info: Overwriting symbol font largesymbols' in version normal'
(Font) OMX/cmex/m/n --> OMX/lmex/m/n on input line 25.
LaTeX Font Info: Overwriting symbol font operators' in version bold'
(Font) OT1/cmr/bx/n --> OT1/lmr/bx/n on input line 26.
LaTeX Font Info: Overwriting symbol font letters' in version bold'
(Font) OML/cmm/b/it --> OML/lmm/b/it on input line 27.
LaTeX Font Info: Overwriting symbol font symbols' in version bold'
(Font) OMS/cmsy/b/n --> OMS/lmsy/b/n on input line 28.
LaTeX Font Info: Overwriting symbol font largesymbols' in version bold'
(Font) OMX/cmex/m/n --> OMX/lmex/m/n on input line 29.
LaTeX Font Info: Overwriting math alphabet \mathbf' in version normal'
(Font) OT1/cmr/bx/n --> OT1/lmr/bx/n on input line 31.
LaTeX Font Info: Overwriting math alphabet \mathsf' in version normal'
(Font) OT1/cmss/m/n --> OT1/lmss/m/n on input line 32.
LaTeX Font Info: Overwriting math alphabet \mathit' in version normal'
(Font) OT1/cmr/m/it --> OT1/lmr/m/it on input line 33.
LaTeX Font Info: Overwriting math alphabet \mathtt' in version normal'
(Font) OT1/cmtt/m/n --> OT1/lmtt/m/n on input line 34.
LaTeX Font Info: Overwriting math alphabet \mathbf' in version bold'
(Font) OT1/cmr/bx/n --> OT1/lmr/bx/n on input line 35.
LaTeX Font Info: Overwriting math alphabet \mathsf' in version bold'
(Font) OT1/cmss/bx/n --> OT1/lmss/bx/n on input line 36.
LaTeX Font Info: Overwriting math alphabet \mathit' in version bold'
(Font) OT1/cmr/bx/it --> OT1/lmr/bx/it on input line 37.
LaTeX Font Info: Overwriting math alphabet \mathtt' in version bold'
(Font) OT1/cmtt/m/n --> OT1/lmtt/m/n on input line 38.
) (/usr/local/texlive/2022/texmf-dist/tex/latex/base/fontenc.sty
Package: fontenc 2021/04/29 v2.0v Standard LaTeX package
LaTeX Font Info: Trying to load font information for T1+lmr on input line 11
2.
(/usr/local/texlive/2022/texmf-dist/tex/latex/lm/t1lmr.fd
File: t1lmr.fd 2015/05/01 v1.6.1 Font defs for Latin Modern
)) (/usr/local/texlive/2022/texmf-dist/tex/latex/txfonts/txfonts.sty
Package: txfonts 2008/01/22 v3.2.1
LaTeX Font Info: Redeclaring symbol font operators' on input line 21. LaTeX Font Info: Overwriting symbol font operators' in version normal' (Font) OT1/lmr/m/n --> OT1/txr/m/n on input line 21. LaTeX Font Info: Overwriting symbol font operators' in version bold' (Font) OT1/lmr/bx/n --> OT1/txr/m/n on input line 21. LaTeX Font Info: Overwriting symbol font operators' in version bold' (Font) OT1/txr/m/n --> OT1/txr/bx/n on input line 22. \symitalic=\mathgroup4 LaTeX Font Info: Overwriting symbol font italic' in version bold' (Font) OT1/txr/m/it --> OT1/txr/bx/it on input line 26. LaTeX Font Info: Redeclaring math alphabet \mathbf on input line 29. LaTeX Font Info: Overwriting math alphabet \mathbf' in version normal' (Font) OT1/lmr/bx/n --> OT1/txr/bx/n on input line 29. LaTeX Font Info: Overwriting math alphabet \mathbf' in version bold' (Font) OT1/lmr/bx/n --> OT1/txr/bx/n on input line 29. LaTeX Font Info: Redeclaring math alphabet \mathit on input line 30. LaTeX Font Info: Overwriting math alphabet \mathit' in version normal' (Font) OT1/lmr/m/it --> OT1/txr/m/it on input line 30. LaTeX Font Info: Overwriting math alphabet \mathit' in version bold' (Font) OT1/lmr/bx/it --> OT1/txr/m/it on input line 30. LaTeX Font Info: Overwriting math alphabet \mathit' in version bold' (Font) OT1/txr/m/it --> OT1/txr/bx/it on input line 31. LaTeX Font Info: Redeclaring math alphabet \mathsf on input line 40. LaTeX Font Info: Overwriting math alphabet \mathsf' in version normal' (Font) OT1/lmss/m/n --> OT1/txss/m/n on input line 40. LaTeX Font Info: Overwriting math alphabet \mathsf' in version bold' (Font) OT1/lmss/bx/n --> OT1/txss/m/n on input line 40. LaTeX Font Info: Overwriting math alphabet \mathsf' in version bold' (Font) OT1/txss/m/n --> OT1/txss/b/n on input line 41. LaTeX Font Info: Redeclaring math alphabet \mathtt on input line 50. LaTeX Font Info: Overwriting math alphabet \mathtt' in version normal' (Font) OT1/lmtt/m/n --> OT1/txtt/m/n on input line 50. LaTeX Font Info: Overwriting math alphabet \mathtt' in version bold' (Font) OT1/lmtt/m/n --> OT1/txtt/m/n on input line 50. LaTeX Font Info: Overwriting math alphabet \mathtt' in version bold' (Font) OT1/txtt/m/n --> OT1/txtt/b/n on input line 51. LaTeX Font Info: Redeclaring symbol font letters' on input line 58.
LaTeX Font Info: Overwriting symbol font letters' in version normal'
(Font) OML/lmm/m/it --> OML/txmi/m/it on input line 58.
LaTeX Font Info: Overwriting symbol font letters' in version bold'
(Font) OML/lmm/b/it --> OML/txmi/m/it on input line 58.
LaTeX Font Info: Overwriting symbol font letters' in version bold'
(Font) OML/txmi/m/it --> OML/txmi/bx/it on input line 59.
\symlettersA=\mathgroup5
LaTeX Font Info: Overwriting symbol font lettersA' in version bold'
(Font) U/txmia/m/it --> U/txmia/bx/it on input line 67.
LaTeX Font Info: Redeclaring symbol font symbols' on input line 77. LaTeX Font Info: Overwriting symbol font symbols' in version normal' (Font) OMS/lmsy/m/n --> OMS/txsy/m/n on input line 77. LaTeX Font Info: Overwriting symbol font symbols' in version bold' (Font) OMS/lmsy/b/n --> OMS/txsy/m/n on input line 77. LaTeX Font Info: Overwriting symbol font symbols' in version bold' (Font) OMS/txsy/m/n --> OMS/txsy/bx/n on input line 78. \symAMSa=\mathgroup6 LaTeX Font Info: Overwriting symbol font AMSa' in version bold' (Font) U/txsya/m/n --> U/txsya/bx/n on input line 94. \symAMSb=\mathgroup7 LaTeX Font Info: Overwriting symbol font AMSb' in version bold' (Font) U/txsyb/m/n --> U/txsyb/bx/n on input line 103. \symsymbolsC=\mathgroup8 LaTeX Font Info: Overwriting symbol font symbolsC' in version bold' (Font) U/txsyc/m/n --> U/txsyc/bx/n on input line 113. LaTeX Font Info: Redeclaring symbol font largesymbols' on input line 120.
LaTeX Font Info: Overwriting symbol font largesymbols' in version normal'
(Font) OMX/lmex/m/n --> OMX/txex/m/n on input line 120.
LaTeX Font Info: Overwriting symbol font largesymbols' in version bold'
(Font) OMX/lmex/m/n --> OMX/txex/m/n on input line 120.
LaTeX Font Info: Overwriting symbol font largesymbols' in version bold'
(Font) OMX/txex/m/n --> OMX/txex/bx/n on input line 121.
\symlargesymbolsA=\mathgroup9
LaTeX Font Info: Overwriting symbol font largesymbolsA' in version bold'
(Font) U/txexa/m/n --> U/txexa/bx/n on input line 129.
LaTeX Font Info: Redeclaring math symbol \mathsterling on input line 164.
LaTeX Font Info: Redeclaring math symbol \hbar on input line 591.
LaTeX Info: Redefining \not on input line 1043.
)
apa6.cls: Using txfonts
(/usr/local/texlive/2022/texmf-dist/tex/latex/geometry/geometry.sty
Package: geometry 2020/01/02 v5.9 Page Geometry
(/usr/local/texlive/2022/texmf-dist/tex/latex/graphics/keyval.sty
Package: keyval 2022/05/29 v1.15 key=value parser (DPC)
\KV@toks@=\toks16
) (/usr/local/texlive/2022/texmf-dist/tex/generic/iftex/ifvtex.sty
Package: ifvtex 2019/10/25 v1.7 ifvtex legacy package. Use iftex instead.
(/usr/local/texlive/2022/texmf-dist/tex/generic/iftex/iftex.sty
Package: iftex 2022/02/03 v1.0f TeX engine tests
))
\Gm@cnth=\count194
\Gm@cntv=\count195
\c@Gm@tempcnt=\count196
\Gm@bindingoffset=\dimen139
\Gm@wd@mp=\dimen140
\Gm@odd@mp=\dimen141
\Gm@even@mp=\dimen142
\Gm@layoutwidth=\dimen143
\Gm@layoutheight=\dimen144
\Gm@layouthoffset=\dimen145
\Gm@layoutvoffset=\dimen146
\Gm@dimlist=\toks17
) (/usr/local/texlive/2022/texmf-dist/tex/latex/graphics/graphicx.sty
Package: graphicx 2021/09/16 v1.2d Enhanced LaTeX Graphics (DPC,SPQR)
(/usr/local/texlive/2022/texmf-dist/tex/latex/graphics/graphics.sty
Package: graphics 2022/03/10 v1.4e Standard LaTeX Graphics (DPC,SPQR)
(/usr/local/texlive/2022/texmf-dist/tex/latex/graphics/trig.sty
Package: trig 2021/08/11 v1.11 sin cos tan (DPC)
) (/usr/local/texlive/2022/texmf-dist/tex/latex/graphics-cfg/graphics.cfg
File: graphics.cfg 2016/06/04 v1.11 sample graphics configuration
)
Package graphics Info: Driver file: pdftex.def on input line 107.
(/usr/local/texlive/2022/texmf-dist/tex/latex/graphics-def/pdftex.def
File: pdftex.def 2020/10/05 v1.2a Graphics/color driver for pdftex
))
\Gin@req@height=\dimen147
\Gin@req@width=\dimen148
) (/usr/local/texlive/2022/texmf-dist/tex/latex/booktabs/booktabs.sty
Package: booktabs 2020/01/12 v1.61803398 Publication quality tables
\heavyrulewidth=\dimen149
\lightrulewidth=\dimen150
\cmidrulewidth=\dimen151
\belowrulesep=\dimen152
\belowbottomsep=\dimen153
\aboverulesep=\dimen154
\abovetopsep=\dimen155
\cmidrulesep=\dimen156
\cmidrulekern=\dimen157
\defaultaddspace=\dimen158
@cmidla=\count197
@cmidlb=\count198
@aboverulesep=\dimen159
@belowrulesep=\dimen160
@thisruleclass=\count199
@lastruleclass=\count266
@thisrulewidth=\dimen161
)
(/usr/local/texlive/2022/texmf-dist/tex/latex/threeparttable/threeparttable.sty
Package: threeparttable 2003/06/13 v 3.0
@tempboxb=\box51
)
\b@level@one@skip=\skip49
\e@level@one@skip=\skip50
\b@level@two@skip=\skip51
\e@level@two@skip=\skip52
\b@level@three@skip=\skip53
\e@level@three@skip=\skip54
\b@level@four@skip=\skip55
\e@level@four@skip=\skip56
\b@level@five@skip=\skip57
\e@level@five@skip=\skip58
(/usr/local/texlive/2022/texmf-dist/tex/latex/caption/caption.sty
Package: caption 2022/03/01 v3.6b Customizing captions (AR)
(/usr/local/texlive/2022/texmf-dist/tex/latex/caption/caption3.sty
Package: caption3 2022/03/17 v2.3b caption3 kernel (AR)
\caption@tempdima=\dimen162
\captionmargin=\dimen163
\caption@leftmargin=\dimen164
\caption@rightmargin=\dimen165
\caption@width=\dimen166
\caption@indent=\dimen167
\caption@parindent=\dimen168
\caption@hangindent=\dimen169
Package caption Info: Standard document class detected.
)
\c@caption@flags=\count267
\c@continuedfloat=\count268
Package caption Info: threeparttable package is loaded.
)
\c@APAenum=\count269
@text@par@indent=\skip59
\gr@box=\box52
\gr@boxwidth=\skip60
\gr@boxheight=\skip61
(/usr/local/texlive/2022/texmf-dist/tex/latex/tools/bm.sty
Package: bm 2022/01/05 v1.2f Bold Symbol Support (DPC/FMi)
\symboldoperators=\mathgroup10
\symboldletters=\mathgroup11
\symboldsymbols=\mathgroup12
\symboldlargesymbols=\mathgroup13
LaTeX Font Info: Redeclaring math alphabet \mathbf on input line 149.
)
\c@appendix=\count270
(/usr/local/texlive/2022/texmf-dist/tex/latex/sttools/flushend.sty
Package: flushend 2021/10/04 v4.0 Balancing columns in twocolumn mode

! LaTeX Error: Unknown option keeplastbox' for package flushend'.

See the LaTeX manual or LaTeX Companion for explanation.
Type H for immediate help.
...

l.83

Here is how much of TeX's memory you used:
4839 strings out of 478037
72615 string characters out of 5839055
366495 words of memory out of 5000000
23294 multiletter control sequences out of 15000+600000
472249 words of font info for 29 fonts, out of 8000000 for 9000
1141 hyphenation exceptions out of 8191
70i,0n,77p,244b,92s stack positions out of 10000i,1000n,20000p,200000b,200000s

! ==> Fatal error occurred, no output PDF file produced!

System info

> sessioninfo::session_info()
─ Session info ─────────────────────────────────────────────────────────────────────────────────────
 setting  value
 version  R version 4.1.3 (2022-03-10)
 os       macOS Monterey 12.3
 system   aarch64, darwin20
 ui       RStudio
 language (EN)
 collate  en_US.UTF-8
 ctype    en_US.UTF-8
 tz       Europe/London
 date     2022-06-23
 rstudio  2022.07.0-preview+540 Spotted Wakerobin (desktop)
 pandoc   2.18 @ /Applications/RStudio.app/Contents/MacOS/quarto/bin/tools/ (via rmarkdown)

─ Packages ─────────────────────────────────────────────────────────────────────────────────────────
 package     * version    date (UTC) lib source
 callr         3.7.0      2021-04-20 [2] CRAN (R 4.1.0)
 cli           3.3.0      2022-04-25 [2] CRAN (R 4.1.3)
 crayon        1.5.1      2022-03-26 [2] CRAN (R 4.1.1)
 curl          4.3.2      2021-06-23 [2] CRAN (R 4.1.0)
 digest        0.6.29     2021-12-01 [2] CRAN (R 4.1.1)
 evaluate      0.15       2022-02-18 [2] CRAN (R 4.1.1)
 fastmap       1.1.0      2021-01-25 [2] CRAN (R 4.1.0)
 htmltools     0.5.2      2021-08-25 [2] CRAN (R 4.1.1)
 knitr         1.39       2022-04-26 [2] CRAN (R 4.1.1)
 papaja        0.1.0.9999 2022-06-23 [1] Github (crsh/papaja@1f7979f)
 pkgbuild      1.3.1      2021-12-20 [2] CRAN (R 4.1.1)
 prettyunits   1.1.1      2020-01-24 [2] CRAN (R 4.1.0)
 processx      3.6.1      2022-06-17 [1] CRAN (R 4.1.1)
 ps            1.7.1      2022-06-18 [1] CRAN (R 4.1.1)
 R6            2.5.1      2021-08-19 [2] CRAN (R 4.1.1)
 remotes       2.4.2      2021-11-30 [2] CRAN (R 4.1.1)
 renv          0.15.5     2022-05-26 [1] CRAN (R 4.1.1)
 rlang         1.0.2      2022-03-04 [2] CRAN (R 4.1.1)
 rmarkdown     2.14       2022-04-25 [2] CRAN (R 4.1.1)
 rprojroot     2.0.3      2022-04-02 [2] CRAN (R 4.1.1)
 rstudioapi    0.13       2020-11-12 [2] CRAN (R 4.1.0)
 sessioninfo   1.2.2      2021-12-06 [2] CRAN (R 4.1.1)
 tinylabels    0.2.3      2022-02-06 [2] CRAN (R 4.1.1)
 tinytex       0.40       2022-06-15 [2] CRAN (R 4.1.1)
 vctrs         0.4.1      2022-04-13 [2] CRAN (R 4.1.1)
 withr         2.5.0      2022-03-03 [2] CRAN (R 4.1.1)
 xfun          0.31       2022-05-10 [2] CRAN (R 4.1.1)
 yaml          2.3.5      2022-02-21 [2] CRAN (R 4.1.1)

@crsh crsh added the bug label Jul 4, 2022
@crsh
Copy link
Owner

crsh commented Oct 27, 2022

Hmm, I just tried to reproduce this again, but I can't. I can confirm, however, I'm using the same version of apa6 as Matti. pandoc 2.19.2. Curiously, my logs indicate that flushend was not loaded at all. I'm really not sure what is going on here, but it seems you are using different LaTeX packages than I am. Could you add the following to the YAML front matter

header-includes:
  - \listfiles

and this to a chunk in the Rmd

options(tinytex.clean = FALSE)

and then share this part of the log file?

 *File List*
    apa6.cls    2020/01/13 v2.34 APA formatting (6th edition)
 article.cls    2021/10/04 v1.4n Standard LaTeX document class
  size10.clo    2021/10/04 v1.4n Standard LaTeX file (size option)
etoolbox.sty    2020/10/05 v2.5k e-TeX tools for LaTeX (JAW)
 lmodern.sty    2015/05/01 v1.6.1 Latin Modern Fonts
 fontenc.sty    2021/04/29 v2.0v Standard LaTeX package
   t1lmr.fd    2015/05/01 v1.6.1 Font defs for Latin Modern
   times.sty    2020/03/25 PSNFSS-v9.3 (SPQR) 
 mathptm.sty    2020/03/25 PSNFSS-v9.3 Times w/ Math (SPQR, WaS) 
geometry.sty    2020/01/02 v5.9 Page Geometry
  keyval.sty    2022/05/29 v1.15 key=value parser (DPC)
  ifvtex.sty    2019/10/25 v1.7 ifvtex legacy package. Use iftex instead.
   iftex.sty    2022/02/03 v1.0f TeX engine tests
graphicx.sty    2021/09/16 v1.2d Enhanced LaTeX Graphics (DPC,SPQR)
graphics.sty    2022/03/10 v1.4e Standard LaTeX Graphics (DPC,SPQR)
    trig.sty    2021/08/11 v1.11 sin cos tan (DPC)
graphics.cfg    2016/06/04 v1.11 sample graphics configuration
  pdftex.def    2022/09/22 v1.2b Graphics/color driver for pdftex
booktabs.sty    2020/01/12 v1.61803398 Publication quality tables
threeparttable.sty    2003/06/13  v 3.0
 caption.sty    2022/03/01 v3.6b Customizing captions (AR)
caption3.sty    2022/03/17 v2.3b caption3 kernel (AR)
      bm.sty    2022/01/05 v1.2f Bold Symbol Support (DPC/FMi)
ftnright.sty    2014/10/28 v1.1f footnote layout package (FMi)
 amsmath.sty    2022/04/08 v2.17n AMS math features
 amstext.sty    2021/08/26 v2.01 AMS text
  amsgen.sty    1999/11/30 v2.0 generic functions
  amsbsy.sty    1999/11/29 v1.2d Bold Symbols
  amsopn.sty    2022/04/08 v2.04 operator names
 amssymb.sty    2013/01/14 v3.01 AMS font symbols
amsfonts.sty    2013/01/14 v3.01 Basic AMSFonts support
 fontenc.sty    2021/04/29 v2.0v Standard LaTeX package
   t1ptm.fd    2001/06/04 font definitions for T1/ptm.
inputenc.sty    2021/02/14 v1.3d Input encoding file
textcomp.sty    2020/02/02 v2.0n Standard LaTeX package
 upquote.sty    2012/04/19 v1.3 upright-quote and grave-accent glyphs in verbatim
microtype.sty    2022/06/23 v3.0f Micro-typographical refinements (RS)
microtype-pdftex.def    2022/06/23 v3.0f Definitions specific to pdftex (RS)
microtype.cfg    2022/06/23 v3.0f microtype main configuration file (RS)
 parskip.sty    2021-03-14 v2.0h non-zero parskip adjustments
kvoptions.sty    2022-06-15 v3.15 Key value format for package options (HO)
 ltxcmds.sty    2020-05-10 v1.25 LaTeX kernel commands for general use (HO)
kvsetkeys.sty    2022-10-05 v1.19 Key value parser (HO)
  xcolor.sty    2022/06/12 v2.14 LaTeX color extensions (UK)
   color.cfg    2016/01/02 v1.6 sample color configuration
mathcolor.ltx
   babel.sty    2022/10/23 3.82 The Babel package
     nil.ldf    2022/10/23 3.82 Nil language
babel-english.tex
 upgreek.sty    2003/02/12 v2.0 (WaS)
longtable.sty    2021-09-01 v4.17 Multi-page Table package (DPC)
  lscape.sty    2020/05/28 v3.02 Landscape Pages (DPC)
multirow.sty    2021/03/15 v2.8 Span multiple rows of a table
tabularx.sty    2020/01/15 v2.11c `tabularx' package (DPC)
   array.sty    2022/03/10 v2.5f Tabular extension package (FMi)
threeparttablex.sty    2013/07/23 v0.3 by daleif
 environ.sty    2014/05/04 v0.3 A new way to define environments
trimspaces.sty    2009/09/17 v1.1 Trim spaces around a token list
  xpatch.sty    2020/03/25 v0.3a Extending etoolbox patching commands
   expl3.sty    2022-09-28 L3 programming layer (loader) 
l3backend-pdftex.def    2022-09-28 L3 backend support: PDF output (pdfTeX)
  xparse.sty    2022-06-22 L3 Experimental document command parser
dblfloatfix.sty    2012/12/31 v1.0a (JAW)
fixltx2e.sty    2016/12/29 v2.1a fixes to LaTeX (obsolete)
  lineno.sty    2005/11/02 line numbers on paragraphs v4.41
csquotes.sty    2022-09-14 v5.2n context-sensitive quotations (JAW)
csquotes.def    2022-09-14 v5.2n csquotes generic definitions (JAW)
csquotes.cfg    
bookmark.sty    2020-11-06 v1.29 PDF bookmarks (HO)
hyperref.sty    2022-09-22 v7.00t Hypertext links for LaTeX
pdftexcmds.sty    2020-06-27 v0.33 Utility functions of pdfTeX for LuaTeX (HO)
infwarerr.sty    2019/12/03 v1.5 Providing info/warning/error messages (HO)
kvdefinekeys.sty    2019-12-19 v1.6 Define keys (HO)
pdfescape.sty    2019/12/09 v1.15 Implements pdfTeX's escape features (HO)
 hycolor.sty    2020-01-27 v1.10 Color options for hyperref/bookmark (HO)
letltxmacro.sty    2019/12/03 v1.6 Let assignment for LaTeX macros (HO)
 auxhook.sty    2019-12-17 v1.6 Hooks for auxiliary files (HO)
 nameref.sty    2022-05-17 v2.50 Cross-referencing by name of section
refcount.sty    2019/12/15 v3.6 Data extraction from label references (HO)
gettitlestring.sty    2019/12/15 v1.6 Cleanup title references (HO)
  pd1enc.def    2022-09-22 v7.00t Hyperref: PDFDocEncoding definition (HO)
 intcalc.sty    2019/12/15 v1.3 Expandable calculations with integers (HO)
etexcmds.sty    2019/12/15 v1.7 Avoid name clashes with e-TeX commands (HO)
   puenc.def    2022-09-22 v7.00t Hyperref: PDF Unicode definition (HO)
     url.sty    2013/09/16  ver 3.4  Verb mode for urls, etc.
  bitset.sty    2019/12/09 v1.3 Handle bit-vector datatype (HO)
bigintcalc.sty    2019/12/15 v1.5 Expandable calculations on big integers (HO)
atbegshi-ltx.sty    2021/01/10 v1.0c Emulation of the original atbegshi
package with kernel methods
 hpdftex.def    2022-09-22 v7.00t Hyperref driver for pdfTeX
atveryend-ltx.sty    2020/08/19 v1.0a Emulation of the original atveryend package
with kernel methods
rerunfilecheck.sty    2022-07-10 v1.10 Rerun checks for auxiliary files (HO)
uniquecounter.sty    2019/12/15 v1.4 Provide unlimited unique counter (HO)
bkm-pdftex.def    2020-11-06 v1.29 bookmark driver for pdfTeX (HO)
supp-pdf.mkii
epstopdf-base.sty    2020-01-24 v2.11 Base part for package epstopdf
epstopdf-sys.cfg    2010/07/13 v1.3 Configuration of (r)epstopdf for TeX Live
config/APAamerican.txt    2012/02/23 v1.25 apa6 configuration for American English
ltcaption.sty    2021/01/08 v1.4c longtable captions (AR)
  mt-ptm.cfg    2006/04/20 v1.7 microtype config. file: Times (RS)
ot1ptmcm.fd    2000/01/03 Fontinst v1.801 font definitions for OT1/ptmcm.
omlptmcm.fd    2000/01/03 Fontinst v1.801 font definitions for OML/ptmcm.
omspzccm.fd    2000/01/03 Fontinst v1.801 font definitions for OMS/pzccm.
omxpsycm.fd    2000/01/03 Fontinst v1.801 font definitions for OMX/psycm.
  ot1ptm.fd    2001/06/04 font definitions for OT1/ptm.
    umsa.fd    2013/01/14 v3.01 AMS symbols A
  mt-msa.cfg    2006/02/04 v1.1 microtype config. file: AMS symbols (a) (RS)
    umsb.fd    2013/01/14 v3.01 AMS symbols B
  mt-msb.cfg    2005/06/01 v1.0 microtype config. file: AMS symbols (b) (RS)
  mt-eur.cfg    2006/07/31 v1.1 microtype config. file: AMS Euler Roman (RS)
   t1phv.fd    2020/03/25 scalable font definitions for T1/phv.

@mvuorre
Copy link

mvuorre commented Oct 28, 2022

I just updated everything related to this on my mac. I don't know what latex installation R/studio/markdown is using but have updated all my system latex packages with TeX Live Utility. I've no idea how to use tinytex. It doesn't look like the resulting log file has the information yours has:

This is pdfTeX, Version 3.141592653-2.6-1.40.24 (TeX Live 2022) (preloaded format=pdflatex 2022.10.28)  28 OCT 2022 10:43
entering extended mode
 restricted \write18 enabled.
 %&-line parsing enabled.
**Untitled.tex
(./Untitled.tex
LaTeX2e <2022-06-01> patch level 5
L3 programming layer <2022-10-26> (/usr/local/texlive/2022/texmf-dist/tex/latex
/apa6/apa6.cls
Document Class: apa6 2020/01/13 v2.34 APA formatting (6th edition)
(/usr/local/texlive/2022/texmf-dist/tex/latex/base/article.cls
Document Class: article 2021/10/04 v1.4n Standard LaTeX document class
(/usr/local/texlive/2022/texmf-dist/tex/latex/base/size10.clo
File: size10.clo 2021/10/04 v1.4n Standard LaTeX file (size option)
)
\c@part=\count185
\c@section=\count186
\c@subsection=\count187
\c@subsubsection=\count188
\c@paragraph=\count189
\c@subparagraph=\count190
\c@figure=\count191
\c@table=\count192
\abovecaptionskip=\skip47
\belowcaptionskip=\skip48
\bibindent=\dimen138
) (/usr/local/texlive/2022/texmf-dist/tex/latex/etoolbox/etoolbox.sty
Package: etoolbox 2020/10/05 v2.5k e-TeX tools for LaTeX (JAW)
\etb@tempcnta=\count193
)
Class apa6 Info: No bibliography package was specified; defaulting to (but not 
loading) Biblatex on input line 213.
(/usr/local/texlive/2022/texmf-dist/tex/latex/lm/lmodern.sty
Package: lmodern 2015/05/01 v1.6.1 Latin Modern Fonts
LaTeX Font Info:    Overwriting symbol font `operators' in version `normal'
(Font)                  OT1/cmr/m/n --> OT1/lmr/m/n on input line 22.
LaTeX Font Info:    Overwriting symbol font `letters' in version `normal'
(Font)                  OML/cmm/m/it --> OML/lmm/m/it on input line 23.
LaTeX Font Info:    Overwriting symbol font `symbols' in version `normal'
(Font)                  OMS/cmsy/m/n --> OMS/lmsy/m/n on input line 24.
LaTeX Font Info:    Overwriting symbol font `largesymbols' in version `normal'
(Font)                  OMX/cmex/m/n --> OMX/lmex/m/n on input line 25.
LaTeX Font Info:    Overwriting symbol font `operators' in version `bold'
(Font)                  OT1/cmr/bx/n --> OT1/lmr/bx/n on input line 26.
LaTeX Font Info:    Overwriting symbol font `letters' in version `bold'
(Font)                  OML/cmm/b/it --> OML/lmm/b/it on input line 27.
LaTeX Font Info:    Overwriting symbol font `symbols' in version `bold'
(Font)                  OMS/cmsy/b/n --> OMS/lmsy/b/n on input line 28.
LaTeX Font Info:    Overwriting symbol font `largesymbols' in version `bold'
(Font)                  OMX/cmex/m/n --> OMX/lmex/m/n on input line 29.
LaTeX Font Info:    Overwriting math alphabet `\mathbf' in version `normal'
(Font)                  OT1/cmr/bx/n --> OT1/lmr/bx/n on input line 31.
LaTeX Font Info:    Overwriting math alphabet `\mathsf' in version `normal'
(Font)                  OT1/cmss/m/n --> OT1/lmss/m/n on input line 32.
LaTeX Font Info:    Overwriting math alphabet `\mathit' in version `normal'
(Font)                  OT1/cmr/m/it --> OT1/lmr/m/it on input line 33.
LaTeX Font Info:    Overwriting math alphabet `\mathtt' in version `normal'
(Font)                  OT1/cmtt/m/n --> OT1/lmtt/m/n on input line 34.
LaTeX Font Info:    Overwriting math alphabet `\mathbf' in version `bold'
(Font)                  OT1/cmr/bx/n --> OT1/lmr/bx/n on input line 35.
LaTeX Font Info:    Overwriting math alphabet `\mathsf' in version `bold'
(Font)                  OT1/cmss/bx/n --> OT1/lmss/bx/n on input line 36.
LaTeX Font Info:    Overwriting math alphabet `\mathit' in version `bold'
(Font)                  OT1/cmr/bx/it --> OT1/lmr/bx/it on input line 37.
LaTeX Font Info:    Overwriting math alphabet `\mathtt' in version `bold'
(Font)                  OT1/cmtt/m/n --> OT1/lmtt/m/n on input line 38.
) (/usr/local/texlive/2022/texmf-dist/tex/latex/base/fontenc.sty
Package: fontenc 2021/04/29 v2.0v Standard LaTeX package
LaTeX Font Info:    Trying to load font information for T1+lmr on input line 11
2.
(/usr/local/texlive/2022/texmf-dist/tex/latex/lm/t1lmr.fd
File: t1lmr.fd 2015/05/01 v1.6.1 Font defs for Latin Modern
)) (/usr/local/texlive/2022/texmf-dist/tex/latex/txfonts/txfonts.sty
Package: txfonts 2008/01/22 v3.2.1
LaTeX Font Info:    Redeclaring symbol font `operators' on input line 21.
LaTeX Font Info:    Overwriting symbol font `operators' in version `normal'
(Font)                  OT1/lmr/m/n --> OT1/txr/m/n on input line 21.
LaTeX Font Info:    Overwriting symbol font `operators' in version `bold'
(Font)                  OT1/lmr/bx/n --> OT1/txr/m/n on input line 21.
LaTeX Font Info:    Overwriting symbol font `operators' in version `bold'
(Font)                  OT1/txr/m/n --> OT1/txr/bx/n on input line 22.
\symitalic=\mathgroup4
LaTeX Font Info:    Overwriting symbol font `italic' in version `bold'
(Font)                  OT1/txr/m/it --> OT1/txr/bx/it on input line 26.
LaTeX Font Info:    Redeclaring math alphabet \mathbf on input line 29.
LaTeX Font Info:    Overwriting math alphabet `\mathbf' in version `normal'
(Font)                  OT1/lmr/bx/n --> OT1/txr/bx/n on input line 29.
LaTeX Font Info:    Overwriting math alphabet `\mathbf' in version `bold'
(Font)                  OT1/lmr/bx/n --> OT1/txr/bx/n on input line 29.
LaTeX Font Info:    Redeclaring math alphabet \mathit on input line 30.
LaTeX Font Info:    Overwriting math alphabet `\mathit' in version `normal'
(Font)                  OT1/lmr/m/it --> OT1/txr/m/it on input line 30.
LaTeX Font Info:    Overwriting math alphabet `\mathit' in version `bold'
(Font)                  OT1/lmr/bx/it --> OT1/txr/m/it on input line 30.
LaTeX Font Info:    Overwriting math alphabet `\mathit' in version `bold'
(Font)                  OT1/txr/m/it --> OT1/txr/bx/it on input line 31.
LaTeX Font Info:    Redeclaring math alphabet \mathsf on input line 40.
LaTeX Font Info:    Overwriting math alphabet `\mathsf' in version `normal'
(Font)                  OT1/lmss/m/n --> OT1/txss/m/n on input line 40.
LaTeX Font Info:    Overwriting math alphabet `\mathsf' in version `bold'
(Font)                  OT1/lmss/bx/n --> OT1/txss/m/n on input line 40.
LaTeX Font Info:    Overwriting math alphabet `\mathsf' in version `bold'
(Font)                  OT1/txss/m/n --> OT1/txss/b/n on input line 41.
LaTeX Font Info:    Redeclaring math alphabet \mathtt on input line 50.
LaTeX Font Info:    Overwriting math alphabet `\mathtt' in version `normal'
(Font)                  OT1/lmtt/m/n --> OT1/txtt/m/n on input line 50.
LaTeX Font Info:    Overwriting math alphabet `\mathtt' in version `bold'
(Font)                  OT1/lmtt/m/n --> OT1/txtt/m/n on input line 50.
LaTeX Font Info:    Overwriting math alphabet `\mathtt' in version `bold'
(Font)                  OT1/txtt/m/n --> OT1/txtt/b/n on input line 51.
LaTeX Font Info:    Redeclaring symbol font `letters' on input line 58.
LaTeX Font Info:    Overwriting symbol font `letters' in version `normal'
(Font)                  OML/lmm/m/it --> OML/txmi/m/it on input line 58.
LaTeX Font Info:    Overwriting symbol font `letters' in version `bold'
(Font)                  OML/lmm/b/it --> OML/txmi/m/it on input line 58.
LaTeX Font Info:    Overwriting symbol font `letters' in version `bold'
(Font)                  OML/txmi/m/it --> OML/txmi/bx/it on input line 59.
\symlettersA=\mathgroup5
LaTeX Font Info:    Overwriting symbol font `lettersA' in version `bold'
(Font)                  U/txmia/m/it --> U/txmia/bx/it on input line 67.
LaTeX Font Info:    Redeclaring symbol font `symbols' on input line 77.
LaTeX Font Info:    Overwriting symbol font `symbols' in version `normal'
(Font)                  OMS/lmsy/m/n --> OMS/txsy/m/n on input line 77.
LaTeX Font Info:    Overwriting symbol font `symbols' in version `bold'
(Font)                  OMS/lmsy/b/n --> OMS/txsy/m/n on input line 77.
LaTeX Font Info:    Overwriting symbol font `symbols' in version `bold'
(Font)                  OMS/txsy/m/n --> OMS/txsy/bx/n on input line 78.
\symAMSa=\mathgroup6
LaTeX Font Info:    Overwriting symbol font `AMSa' in version `bold'
(Font)                  U/txsya/m/n --> U/txsya/bx/n on input line 94.
\symAMSb=\mathgroup7
LaTeX Font Info:    Overwriting symbol font `AMSb' in version `bold'
(Font)                  U/txsyb/m/n --> U/txsyb/bx/n on input line 103.
\symsymbolsC=\mathgroup8
LaTeX Font Info:    Overwriting symbol font `symbolsC' in version `bold'
(Font)                  U/txsyc/m/n --> U/txsyc/bx/n on input line 113.
LaTeX Font Info:    Redeclaring symbol font `largesymbols' on input line 120.
LaTeX Font Info:    Overwriting symbol font `largesymbols' in version `normal'
(Font)                  OMX/lmex/m/n --> OMX/txex/m/n on input line 120.
LaTeX Font Info:    Overwriting symbol font `largesymbols' in version `bold'
(Font)                  OMX/lmex/m/n --> OMX/txex/m/n on input line 120.
LaTeX Font Info:    Overwriting symbol font `largesymbols' in version `bold'
(Font)                  OMX/txex/m/n --> OMX/txex/bx/n on input line 121.
\symlargesymbolsA=\mathgroup9
LaTeX Font Info:    Overwriting symbol font `largesymbolsA' in version `bold'
(Font)                  U/txexa/m/n --> U/txexa/bx/n on input line 129.
LaTeX Font Info:    Redeclaring math symbol \mathsterling on input line 164.
LaTeX Font Info:    Redeclaring math symbol \hbar on input line 591.
LaTeX Info: Redefining \not on input line 1043.
)
apa6.cls: Using txfonts
(/usr/local/texlive/2022/texmf-dist/tex/latex/geometry/geometry.sty
Package: geometry 2020/01/02 v5.9 Page Geometry
(/usr/local/texlive/2022/texmf-dist/tex/latex/graphics/keyval.sty
Package: keyval 2022/05/29 v1.15 key=value parser (DPC)
\KV@toks@=\toks16
) (/usr/local/texlive/2022/texmf-dist/tex/generic/iftex/ifvtex.sty
Package: ifvtex 2019/10/25 v1.7 ifvtex legacy package. Use iftex instead.
(/usr/local/texlive/2022/texmf-dist/tex/generic/iftex/iftex.sty
Package: iftex 2022/02/03 v1.0f TeX engine tests
))
\Gm@cnth=\count194
\Gm@cntv=\count195
\c@Gm@tempcnt=\count196
\Gm@bindingoffset=\dimen139
\Gm@wd@mp=\dimen140
\Gm@odd@mp=\dimen141
\Gm@even@mp=\dimen142
\Gm@layoutwidth=\dimen143
\Gm@layoutheight=\dimen144
\Gm@layouthoffset=\dimen145
\Gm@layoutvoffset=\dimen146
\Gm@dimlist=\toks17
) (/usr/local/texlive/2022/texmf-dist/tex/latex/graphics/graphicx.sty
Package: graphicx 2021/09/16 v1.2d Enhanced LaTeX Graphics (DPC,SPQR)
(/usr/local/texlive/2022/texmf-dist/tex/latex/graphics/graphics.sty
Package: graphics 2022/03/10 v1.4e Standard LaTeX Graphics (DPC,SPQR)
(/usr/local/texlive/2022/texmf-dist/tex/latex/graphics/trig.sty
Package: trig 2021/08/11 v1.11 sin cos tan (DPC)
) (/usr/local/texlive/2022/texmf-dist/tex/latex/graphics-cfg/graphics.cfg
File: graphics.cfg 2016/06/04 v1.11 sample graphics configuration
)
Package graphics Info: Driver file: pdftex.def on input line 107.
(/usr/local/texlive/2022/texmf-dist/tex/latex/graphics-def/pdftex.def
File: pdftex.def 2022/09/22 v1.2b Graphics/color driver for pdftex
\stockwidth=\dimen147
\stockheight=\dimen148
))
\Gin@req@height=\dimen149
\Gin@req@width=\dimen150
) (/usr/local/texlive/2022/texmf-dist/tex/latex/booktabs/booktabs.sty
Package: booktabs 2020/01/12 v1.61803398 Publication quality tables
\heavyrulewidth=\dimen151
\lightrulewidth=\dimen152
\cmidrulewidth=\dimen153
\belowrulesep=\dimen154
\belowbottomsep=\dimen155
\aboverulesep=\dimen156
\abovetopsep=\dimen157
\cmidrulesep=\dimen158
\cmidrulekern=\dimen159
\defaultaddspace=\dimen160
\@cmidla=\count197
\@cmidlb=\count198
\@aboverulesep=\dimen161
\@belowrulesep=\dimen162
\@thisruleclass=\count199
\@lastruleclass=\count266
\@thisrulewidth=\dimen163
)
(/usr/local/texlive/2022/texmf-dist/tex/latex/threeparttable/threeparttable.sty
Package: threeparttable 2003/06/13  v 3.0
\@tempboxb=\box51
)
\b@level@one@skip=\skip49
\e@level@one@skip=\skip50
\b@level@two@skip=\skip51
\e@level@two@skip=\skip52
\b@level@three@skip=\skip53
\e@level@three@skip=\skip54
\b@level@four@skip=\skip55
\e@level@four@skip=\skip56
\b@level@five@skip=\skip57
\e@level@five@skip=\skip58
(/usr/local/texlive/2022/texmf-dist/tex/latex/caption/caption.sty
Package: caption 2022/03/01 v3.6b Customizing captions (AR)
(/usr/local/texlive/2022/texmf-dist/tex/latex/caption/caption3.sty
Package: caption3 2022/03/17 v2.3b caption3 kernel (AR)
\caption@tempdima=\dimen164
\captionmargin=\dimen165
\caption@leftmargin=\dimen166
\caption@rightmargin=\dimen167
\caption@width=\dimen168
\caption@indent=\dimen169
\caption@parindent=\dimen170
\caption@hangindent=\dimen171
Package caption Info: Standard document class detected.
)
\c@caption@flags=\count267
\c@continuedfloat=\count268
Package caption Info: threeparttable package is loaded.
)
\c@APAenum=\count269
\@text@par@indent=\skip59
\gr@box=\box52
\gr@boxwidth=\skip60
\gr@boxheight=\skip61
(/usr/local/texlive/2022/texmf-dist/tex/latex/tools/bm.sty
Package: bm 2022/01/05 v1.2f Bold Symbol Support (DPC/FMi)
\symboldoperators=\mathgroup10
\symboldletters=\mathgroup11
\symboldsymbols=\mathgroup12
\symboldlargesymbols=\mathgroup13
LaTeX Font Info:    Redeclaring math alphabet \mathbf on input line 149.
)
\c@appendix=\count270
(/usr/local/texlive/2022/texmf-dist/tex/latex/sttools/flushend.sty
Package: flushend 2021/10/04 v4.0 Balancing columns in twocolumn mode

! LaTeX Error: Unknown option `keeplastbox' for package `flushend'.

See the LaTeX manual or LaTeX Companion for explanation.
Type  H <return>  for immediate help.
 ...                                              
                                                  
l.83 
      
Here is how much of TeX's memory you used:
 4837 strings out of 475066
 72618 string characters out of 5778774
 409130 words of memory out of 5000000
 26260 multiletter control sequences out of 15000+600000
 472249 words of font info for 29 fonts, out of 8000000 for 9000
 1141 hyphenation exceptions out of 8191
 70i,0n,77p,250b,92s stack positions out of 10000i,1000n,20000p,200000b,200000s

!  ==> Fatal error occurred, no output PDF file produced!

@crsh
Copy link
Owner

crsh commented Oct 28, 2022

Ah, it seems the apa6 document class only uses flushend if it's installed:

% need the `keeplastbox' option to allow final reference to be
% properly indented on the final line
% https://tex.stackexchange.com/questions/198287/reference-and-biography-indentation-issue
\IfFileExists{flushend.sty}{\RequirePackage[keeplastbox]{flushend}}{}

So a short-term solution may be to uninstall that package.

Interestingly, I was unable to find a mention of the keeplastbox option in the package documentation. As noted above, I think this is a bug in apa6 that should be raised with its maintainer Brian Beitzel. The commit message in apa7 also notes that the option caused compatibility issues with the current version of flushend (which is why it was removed there). I don't think there's anything I can do to fix this.

@mvuorre
Copy link

mvuorre commented Oct 28, 2022

OK, good to know. I'll stick with the APA7 stuff then. Also fyi I don't have the flushend package installed, and TeX Live Utility doesn't even find it.

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Projects
None yet
Development

No branches or pull requests

5 participants