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JN.1.50(JN.1 + S:A67V, S:L249F, S:V445P, S:F456L) + S:R346T(6 seq, 3 countries) #2587

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DoropFan opened this issue May 13, 2024 · 7 comments
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JN.1.50(JN.1 + S:A67V, S:L249F, S:V445P, S:F456L) + S:R346T(6 seq, 3 countries) #2587

DoropFan opened this issue May 13, 2024 · 7 comments

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@DoropFan
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DoropFan commented May 13, 2024 •
edited

Add---
JN.1.50 + S:R346T Found it By @FedeGueli
sars-cov-2-variants/lineage-proposals#1253

JN.1.50>T8749G, C11704T, S:R346T(G22599C)

Transferred from:sars-cov-2-variants/lineage-proposals#1253
Branch 83

Sub-lineage of:JN.1
Earliest sequence:2024-03-22(Norway)|EPI_ISL_19114550
Most recent sequence:2024-04-29(United States)|EPI_ISL_19108763
Countries circulating:United States(2), Norway(1), France(1), Ireland(1)
Sequences:5

UShER Tree
JN.1>C9298T>S:L249F(G22309C)>S:A67V(C21762T), S:F456L(T22930G)>C4456T, S:H445P(A22896C)
JN1+L249F+A67VF456L+346T

Query: G22309C, C4456T, C9298T
346T: G22309C, C4456T, C9298T, G22599C

CovSpectrum

Genomes
EPI_ISL_19116225
EPI_ISL_19086278
EPI_ISL_19108763
EPI_ISL_19114550
EPI_ISL_19108187
@DoropFan DoropFan changed the title JN.1 + S:L249F + S:A67V, S:F456L + S:V445P(5 seq, 4 countries) + S:R346T(1 seq) JN.1 + S:L249F + S:A67V, S:F456L + S:V445P(7 seq, 5 countries) + S:R346T(1 seq) May 13, 2024
@DoropFan
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Spain
EPI_ISL_19131017
EPI_ISL_19131026

@aviczhl2 aviczhl2 mentioned this issue May 13, 2024
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@FedeGueli FedeGueli mentioned this issue May 14, 2024
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@DoropFan DoropFan changed the title JN.1 + S:L249F + S:A67V, S:F456L + S:V445P(7 seq, 5 countries) + S:R346T(1 seq) JN.1 + S:L249F + S:A67V, S:F456L + S:V445P(8 seq, 6 countries) + S:R346T(1 seq) May 15, 2024
@DoropFan
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Denmark|EPI_ISL_19129949

@FedeGueli
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10 now It popped up in Galicia(Spain) where there is an uptick in cases and British Columbia (Canada)
@corneliusroemer this could be one of the fastest.

@DoropFan DoropFan changed the title JN.1 + S:L249F + S:A67V, S:F456L + S:V445P(8 seq, 6 countries) + S:R346T(1 seq) JN.1 + S:L249F + S:A67V, S:F456L + S:V445P(10 seq, 6 countries) + S:R346T(1 seq) May 17, 2024
@FedeGueli
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Now designated JN.1.50 via 935a255

FedeGueli referenced this issue May 18, 2024
@corneliusroemer
Designate JN.1.50 (S:H445P,S:F456L, S:A67V, S:L249F, Europe)
935a255
@DoropFan
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346T EnglandJN1 50+346T

@FedeGueli
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346T EnglandJN1 50+346T

Please rearrange the title to seek a designation of the JN.1.50 Flirt Branch that is now 3

@DoropFan DoropFan changed the title JN.1 + S:L249F + S:A67V, S:F456L + S:V445P(10 seq, 6 countries) + S:R346T(1 seq) JN.1.50(JN.1 + S:A67V, S:L249F, S:V445P, S:F456L) + S:R346T(3 seq, 2 countries) May 19, 2024
@DoropFan DoropFan changed the title JN.1.50(JN.1 + S:A67V, S:L249F, S:V445P, S:F456L) + S:R346T(3 seq, 2 countries) JN.1.50(JN.1 + S:A67V, S:L249F, S:V445P, S:F456L) + S:R346T(4 seq, 2 countries) May 20, 2024
@DoropFan DoropFan changed the title JN.1.50(JN.1 + S:A67V, S:L249F, S:V445P, S:F456L) + S:R346T(4 seq, 2 countries) JN.1.50(JN.1 + S:A67V, S:L249F, S:V445P, S:F456L) + S:R346T(6 seq, 3 countries) May 26, 2024
@FedeGueli
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Designated JN.1.50.1 via 06fd164

FedeGueli referenced this issue May 28, 2024
@corneliusroemer
Designate JN.1.50.1 (S:R346T)
06fd164
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@FedeGueli @DoropFan