Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Undesignated S:V1264L lineage in JN.1 (271 Samples, 18 Countries) #2573

Closed
FedeGueli opened this issue Apr 29, 2024 · 2 comments
Closed

Undesignated S:V1264L lineage in JN.1 (271 Samples, 18 Countries) #2573

FedeGueli opened this issue Apr 29, 2024 · 2 comments

Comments

@FedeGueli
Copy link
Contributor

Earlier tracked in sars-cov-2-variants/lineage-proposals#1401
Although not fast it is quite big and still around

Defining mutations:
JN.1> C5497T > S:V1264L (G25352T)
Query: C5497T ,G25352T,T3565C
Samples : 248

.IDs EPI_ISL_18593890, EPI_ISL_18599951, EPI_ISL_18602001, EPI_ISL_18619780, EPI_ISL_18663535, EPI_ISL_18668211, EPI_ISL_18692245, EPI_ISL_18696840, EPI_ISL_18697169, EPI_ISL_18707775, EPI_ISL_18708838, EPI_ISL_18722379-18722381, EPI_ISL_18724921, EPI_ISL_18728312, EPI_ISL_18728795, EPI_ISL_18729289, EPI_ISL_18732331, EPI_ISL_18754855, EPI_ISL_18756986, EPI_ISL_18757010, EPI_ISL_18757215, EPI_ISL_18757353, EPI_ISL_18757421, EPI_ISL_18757474, EPI_ISL_18768678-18768679, EPI_ISL_18769009, EPI_ISL_18775369-18775370, EPI_ISL_18775373-18775374, EPI_ISL_18779349, EPI_ISL_18779488, EPI_ISL_18779954, EPI_ISL_18780009, EPI_ISL_18784573, EPI_ISL_18789992, EPI_ISL_18794088, EPI_ISL_18794952, EPI_ISL_18798117, EPI_ISL_18802118, EPI_ISL_18803585, EPI_ISL_18804641, EPI_ISL_18804689, EPI_ISL_18808490, EPI_ISL_18808696, EPI_ISL_18808806, EPI_ISL_18817322, EPI_ISL_18817346, EPI_ISL_18821236, EPI_ISL_18826421, EPI_ISL_18826452, EPI_ISL_18826652, EPI_ISL_18826768, EPI_ISL_18827680, EPI_ISL_18827707, EPI_ISL_18827748, EPI_ISL_18827931, EPI_ISL_18828918, EPI_ISL_18829900-18829901, EPI_ISL_18829904, EPI_ISL_18830308, EPI_ISL_18832369, EPI_ISL_18834980, EPI_ISL_18835921, EPI_ISL_18836044, EPI_ISL_18836455, EPI_ISL_18836594, EPI_ISL_18836768, EPI_ISL_18839699, EPI_ISL_18841310, EPI_ISL_18847617, EPI_ISL_18847731, EPI_ISL_18847790, EPI_ISL_18849700, EPI_ISL_18852196, EPI_ISL_18852509, EPI_ISL_18854924, EPI_ISL_18856200, EPI_ISL_18859530, EPI_ISL_18859538, EPI_ISL_18859731, EPI_ISL_18861930, EPI_ISL_18863231, EPI_ISL_18863283, EPI_ISL_18863290, EPI_ISL_18863410, EPI_ISL_18863599, EPI_ISL_18863895, EPI_ISL_18871056, EPI_ISL_18871284, EPI_ISL_18871289, EPI_ISL_18877729, EPI_ISL_18877982, EPI_ISL_18880464, EPI_ISL_18880474, EPI_ISL_18880507, EPI_ISL_18880725, EPI_ISL_18881948, EPI_ISL_18882387, EPI_ISL_18882413, EPI_ISL_18882450, EPI_ISL_18882589, EPI_ISL_18882644-18882645, EPI_ISL_18882721, EPI_ISL_18882958, EPI_ISL_18882989, EPI_ISL_18883904, EPI_ISL_18886233, EPI_ISL_18887349, EPI_ISL_18887548, EPI_ISL_18888389, EPI_ISL_18892302, EPI_ISL_18892367, EPI_ISL_18893294, EPI_ISL_18895135, EPI_ISL_18895209, EPI_ISL_18896870, EPI_ISL_18905448, EPI_ISL_18908732, EPI_ISL_18914888, EPI_ISL_18917603, EPI_ISL_18919407, EPI_ISL_18919434, EPI_ISL_18920155, EPI_ISL_18920201, EPI_ISL_18920450, EPI_ISL_18920567, EPI_ISL_18920734, EPI_ISL_18920958, EPI_ISL_18921045, EPI_ISL_18921730-18921731, EPI_ISL_18921756, EPI_ISL_18922760, EPI_ISL_18927869, EPI_ISL_18928322, EPI_ISL_18933271, EPI_ISL_18935273, EPI_ISL_18936882, EPI_ISL_18936885, EPI_ISL_18937463, EPI_ISL_18939743, EPI_ISL_18939777, EPI_ISL_18940285, EPI_ISL_18942189, EPI_ISL_18942196, EPI_ISL_18942294, EPI_ISL_18942306, EPI_ISL_18942669, EPI_ISL_18948955, EPI_ISL_18948975, EPI_ISL_18948989, EPI_ISL_18953275, EPI_ISL_18954273, EPI_ISL_18955277, EPI_ISL_18956901, EPI_ISL_18958392, EPI_ISL_18958423, EPI_ISL_18959042, EPI_ISL_18961992, EPI_ISL_18962877, EPI_ISL_18964650, EPI_ISL_18965890, EPI_ISL_18969524, EPI_ISL_18971162, EPI_ISL_18971173, EPI_ISL_18971246, EPI_ISL_18972466, EPI_ISL_18972476-18972477, EPI_ISL_18972502, EPI_ISL_18973565-18973566, EPI_ISL_18974531, EPI_ISL_18974670, EPI_ISL_18978410, EPI_ISL_18978514, EPI_ISL_18979066, EPI_ISL_18979357, EPI_ISL_18980806, EPI_ISL_18981097, EPI_ISL_18981622-18981623, EPI_ISL_18989575, EPI_ISL_18992652, EPI_ISL_18998761-18998762, EPI_ISL_19002256, EPI_ISL_19002507, EPI_ISL_19002827, EPI_ISL_19012558, EPI_ISL_19012659, EPI_ISL_19012692, EPI_ISL_19012701, EPI_ISL_19012751, EPI_ISL_19014113, EPI_ISL_19014282, EPI_ISL_19015462, EPI_ISL_19019693, EPI_ISL_19021241, EPI_ISL_19022761, EPI_ISL_19023246, EPI_ISL_19023249, EPI_ISL_19023258, EPI_ISL_19023371, EPI_ISL_19024291, EPI_ISL_19024634, EPI_ISL_19025946, EPI_ISL_19027368, EPI_ISL_19027421, EPI_ISL_19027741, EPI_ISL_19030233, EPI_ISL_19035384, EPI_ISL_19037457, EPI_ISL_19037477, EPI_ISL_19037675, EPI_ISL_19037761, EPI_ISL_19038638, EPI_ISL_19038857, EPI_ISL_19040436, EPI_ISL_19040449, EPI_ISL_19040899, EPI_ISL_19043505, EPI_ISL_19044172, EPI_ISL_19044556, EPI_ISL_19049454, EPI_ISL_19057134, EPI_ISL_19060334, EPI_ISL_19060349, EPI_ISL_19064161-19064162, EPI_ISL_19065046, EPI_ISL_19065055, EPI_ISL_19066917, EPI_ISL_19068427, EPI_ISL_19069813, EPI_ISL_19073156, EPI_ISL_19073778, EPI_ISL_19074022, EPI_ISL_19076824, EPI_ISL_19077208, EPI_ISL_19077454, EPI_ISL_19079475
First collected in Germany on 2023-11-21 Countries: 18 ( main country is US ) Tree: Screenshot 2024-04-29 alle 11 56 03 https://nextstrain.org/fetch/genome-test.gi.ucsc.edu/trash/ct/subtreeAuspice1_genome_test_62e2b_f6dc50.json?f_userOrOld=uploaded%20sample&label=id:node_6939566
@FedeGueli FedeGueli changed the title Undesignated S:V1264L lineage in JN.1 (248 Samples, 18 Countries) Undesignated S:V1264L lineage in JN.1 (259 Samples, 18 Countries) May 8, 2024
@FedeGueli FedeGueli changed the title Undesignated S:V1264L lineage in JN.1 (259 Samples, 18 Countries) Undesignated S:V1264L lineage in JN.1 (271 Samples, 18 Countries) May 22, 2024
@FedeGueli
Copy link
Contributor Author

271

@FedeGueli
Copy link
Contributor Author

Still not sampled in May, closing it

@FedeGueli FedeGueli closed this as not planned Won't fix, can't repro, duplicate, stale May 22, 2024
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
None yet
Projects
None yet
Development

No branches or pull requests

1 participant