JN.1 + S:K679R emerged in Malaysia(118 samples,14 countries) with a sublineage with S:F456L in South Korea (12)

[FedeGueli]

Previously tracked in sars-cov-2-variants/lineage-proposals#1350

Defining mutations:
JN.1 >> C19011T > C9836T > S:N>K679R (A23598G)
Query: A23598G,C9836T,C19011T
Samples: 97 (14 countries likely originating in Malaysia and widespread in eastern Asia)
First collected on 2023-12-21
Tree:

https://nextstrain.org/fetch/genome-test.gi.ucsc.edu/trash/ct/subtreeAuspice1_genome_test_5f086_f63c10.json?label=id:node_6987520

IDs

EPI_ISL_18726082, EPI_ISL_18726163, EPI_ISL_18726219, EPI_ISL_18734231, EPI_ISL_18770790, EPI_ISL_18770891, EPI_ISL_18770901, EPI_ISL_18771027, EPI_ISL_18771057, EPI_ISL_18806594, EPI_ISL_18806600, EPI_ISL_18806603, EPI_ISL_18806743, EPI_ISL_18806761, EPI_ISL_18806769, EPI_ISL_18806923, EPI_ISL_18825081, EPI_ISL_18825087, EPI_ISL_18831092, EPI_ISL_18831096, EPI_ISL_18831155, EPI_ISL_18860219, EPI_ISL_18860233-18860234, EPI_ISL_18866060, EPI_ISL_18866404, EPI_ISL_18866835, EPI_ISL_18870333, EPI_ISL_18874676, EPI_ISL_18887884, EPI_ISL_18900043, EPI_ISL_18901945, EPI_ISL_18908296, EPI_ISL_18909554, EPI_ISL_18916136, EPI_ISL_18922475, EPI_ISL_18924514-18924515, EPI_ISL_18935685, EPI_ISL_18935719, EPI_ISL_18948088, EPI_ISL_18952488, EPI_ISL_18952504, EPI_ISL_18952506, EPI_ISL_18952851, EPI_ISL_18952853, EPI_ISL_18966475, EPI_ISL_18966478, EPI_ISL_18967107, EPI_ISL_18968646, EPI_ISL_18982143, EPI_ISL_18982518-18982519, EPI_ISL_18984020, EPI_ISL_18987183, EPI_ISL_18999175, EPI_ISL_18999249, EPI_ISL_19001265, EPI_ISL_19009755, EPI_ISL_19013724, EPI_ISL_19013763, EPI_ISL_19017453, EPI_ISL_19017977, EPI_ISL_19018024, EPI_ISL_19023243, EPI_ISL_19023248, EPI_ISL_19023263, EPI_ISL_19025950-19025951, EPI_ISL_19027375, EPI_ISL_19031079, EPI_ISL_19031091, EPI_ISL_19031130, EPI_ISL_19031215, EPI_ISL_19032888, EPI_ISL_19032973, EPI_ISL_19038238, EPI_ISL_19046129, EPI_ISL_19046472, EPI_ISL_19061933, EPI_ISL_19062106, EPI_ISL_19065264, EPI_ISL_19065415, EPI_ISL_19065553, EPI_ISL_19065659, EPI_ISL_19071400, EPI_ISL_19074301, EPI_ISL_19074333, EPI_ISL_19074556, EPI_ISL_19080148

There is a recent sublineage of this with S:F456L (T22930A) in South Korea
JN.1 >> C19011T > C9836T > S:N>K679R (A23598G)>>C2061T, S:F456L (T22930A)
Query for S:F456L: C2061T, T22930A, C9836T
Samples: 7 ( South Korea)
First collected on 2024-03-18

IDs:
EPI_ISL_19046398, EPI_ISL_19046416, EPI_ISL_19065287,
EPI_ISL_19079706, EPI_ISL_19079739, EPI_ISL_19080032,
EPI_ISL_19080143

[FedeGueli]

106 , 8 with 456L

[FedeGueli]

118/12