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lineage_list.html
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lineage_list.html
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---
layout: default
title: 'Lineage List'
children: ['A', 'A.1', 'A.2', 'A.2.1', 'A.2.2', 'A.2.3', 'A.2.4', 'A.2.5', 'A.2.5.1', 'A.2.5.2', 'A.3', 'A.4', 'A.5', 'A.6', 'A.7', 'A.8', 'A.9', 'A.10', 'A.11', 'A.12', 'A.13', 'A.14', 'A.15', 'A.16', 'A.17', 'A.18', 'A.19', 'A.20', 'A.21', 'A.22', 'A.23', 'A.23.1', 'A.24', 'A.25', 'A.26', 'A.27', 'A.28', 'A.29', 'AA.1', 'AA.2', 'AA.3', 'AA.4', 'AA.5', 'AA.6', 'AA.7', 'AA.8', 'AB.1', 'AC.1', 'AD.1', 'AD.2', 'AD.2.1', 'AE.1', 'AE.2', 'AE.3', 'AE.4', 'AE.5', 'AE.6', 'AE.7', 'AE.8', 'AF.1', 'AG.1', 'AH.1', 'AH.2', 'AH.3', 'AJ.1', 'AK.1', 'AK.2', 'AL.1', 'AM.1', 'AM.2', 'AM.3', 'AM.4', 'AN.1', 'AP.1', 'AQ.1', 'AQ.2', 'AS.1', 'AS.2', 'AT.1', 'AU.1', 'AU.2', 'AU.3', 'AV.1', 'AW.1', 'AY.1', 'AY.2', 'B', 'B.1', 'B.1.1', 'B.1.1.1', 'B.1.1.2', 'B.1.1.3', 'B.1.1.4', 'B.1.1.5', 'B.1.1.6', 'B.1.1.7', 'B.1.1.8', 'B.1.1.10', 'B.1.1.12', 'B.1.1.13', 'B.1.1.14', 'B.1.1.15', 'B.1.1.16', 'B.1.1.17', 'B.1.1.20', 'B.1.1.25', 'B.1.1.26', 'B.1.1.27', 'B.1.1.28', 'B.1.1.29', 'B.1.1.30', 'B.1.1.31', 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'C.2', 'C.2.1', 'C.3', 'C.4', 'C.5', 'C.6', 'C.7', 'C.8', 'C.9', 'C.10', 'C.11', 'C.12', 'C.13', 'C.14', 'C.15', 'C.16', 'C.17', 'C.18', 'C.19', 'C.20', 'C.21', 'C.22', 'C.23', 'C.25', 'C.26', 'C.27', 'C.28', 'C.29', 'C.30', 'C.30.1', 'C.31', 'C.32', 'C.33', 'C.34', 'C.35', 'C.36', 'C.36.1', 'C.36.2', 'C.36.3', 'C.36.3.1', 'C.37', 'D.2', 'D.3', 'D.4', 'D.5', 'E.1', 'F.1', 'G.1', 'H.1', 'I.1', 'J.1', 'K.1', 'K.2', 'K.3', 'L.1', 'L.2', 'L.3', 'L.4', 'M.1', 'M.2', 'M.3', 'N.1', 'N.2', 'N.3', 'N.4', 'N.5', 'N.6', 'N.7', 'N.8', 'N.9', 'N.10', 'P.1', 'P.1.1', 'P.1.2', 'P.2', 'P.3', 'P.4', 'P.5', 'R.1', 'R.2', 'S.1', 'U.1', 'U.2', 'U.3', 'V.1', 'V.2', 'W.1', 'W.2', 'W.3', 'W.4', 'XA', 'Y.1', 'Z.1', '*A.2.1', '*A.8', '*A.10', '*A.13', '*A.14', '*A.20', '*B.1.1.2', '*B.1.1.6', '*B.1.1.20', '*B.1.1.32', '*B.1.1.35', '*B.1.1.36', '*B.1.1.60', '*B.1.1.64', '*B.1.1.65', '*B.1.1.66', '*B.1.1.73', '*B.1.1.76', '*B.1.1.78', '*B.1.1.79', '*B.1.1.80', '*B.1.1.81', '*B.1.1.85', '*B.1.1.94', '*B.1.1.96', '*B.1.1.102', '*B.1.1.103', '*B.1.1.104', '*B.1.1.105', '*B.1.1.106', '*B.1.1.108', '*B.1.1.124', '*B.1.1.126', '*B.1.1.131', '*B.1.1.140', '*B.1.1.143', '*B.1.1.146', '*B.1.1.150', '*B.1.1.151', '*B.1.1.156', '*B.1.1.167', '*B.1.1.173', '*B.1.1.179', '*B.1.1.183', '*B.1.1.195', '*B.1.1.199', '*B.1.1.206', '*B.1.1.211', '*B.1.1.212', '*B.1.1.215', '*B.1.1.223', '*B.1.1.233', '*B.1.1.235', '*B.1.1.238', '*B.1.1.245', '*B.1.1.246', '*B.1.1.247', '*B.1.1.248', '*B.1.1.250', '*B.1.1.252', '*B.1.1.259', '*B.1.1.260', '*B.1.1.264', '*B.1.1.276', '*B.1.1.278', '*B.1.1.281', '*B.1.1.287', '*B.1.1.292', '*B.1.1.293', '*B.1.1.295', '*B.1.1.313', '*B.1.1.314', '*B.1.1.439', '*B.1.3.1', '*B.1.3.2', '*B.1.3.3', '*B.1.3.4', '*B.1.5', '*B.1.5.2', '*B.1.5.5', '*B.1.5.6', '*B.1.5.11', '*B.1.5.12', '*B.1.5.13', '*B.1.5.15', '*B.1.5.16', '*B.1.5.17', '*B.1.5.18', '*B.1.5.19', '*B.1.5.21', '*B.1.5.25', '*B.1.5.26', '*B.1.5.27', '*B.1.5.28', '*B.1.5.29', '*B.1.5.30', '*B.1.5.31', '*B.1.5.32', '*B.1.5.33', 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'*B.1.262', '*B.1.266', '*B.1.269', '*B.1.271', '*B.1.272', '*B.1.275', '*B.1.278', '*B.1.283', '*B.1.286', '*B.1.288', '*B.1.290', '*B.1.295', '*B.1.296', '*B.1.297', '*B.1.297.1', '*B.1.299', '*B.1.300', '*B.1.303', '*B.1.307', '*B.1.312', '*B.1.317', '*B.1.322', '*B.1.327', '*B.1.331', '*B.1.333.1', '*B.1.339', '*B.1.345', '*B.1.347', '*B.1.352', '*B.1.353', '*B.1.364', '*B.1.365', '*B.1.368', '*B.1.373', '*B.1.374', '*B.1.374.1', '*B.1.376', '*B.1.386', '*B.1.392', '*B.1.394', '*B.1.410', '*B.1.412', '*B.1.414', '*B.1.419', '*B.1.440', '*B.1.447', '*B.1.449', '*B.1.454', '*B.1.455', '*B.1.457', '*B.1.457.1', '*B.1.461', '*B.1.464', '*B.1.472', '*B.1.477', '*B.1.481', '*B.1.484', '*B.1.512', '*B.1.514', '*B.1.519', '*B.1.526.1', '*B.1.526.2', '*B.1.526.3', '*B.2.1', '*B.2.6', '*B.2.10', '*B.2.11', '*B.2.12', '*B.6.7', '*B.14', '*B.48', '*B.54', '*C.15', '*E.1', '*F.1', '*H.1', '*I.1', '*J.1']
---
<head>
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</head>
<header class="main">
<h1>{{ page.title }}</h1>
<p>This is a list of active lineages which have been seen in the last year. A complete list of lineages can be found on <a href="https://github.com/cov-lineages/pango-designation">the Pango designation GitHub</a> and a JSON file containing the equivalent data from this page for the full set of lineages can be downloaded in JSON format <a href="https://github.com/cov-lineages/lineages-website/blob/master/_data/lineage_data.full.json">here</a>.</p>
</header>
<div id="tableWrapper">
<br>
{% include searchbar.html %}
<table id="myTable" class="table">
<thead class="thead-light">
<tr>
<th scope="col">Lineage</th>
<th scope="col">Most common countries</th>
<th scope="col">Earliest date</th>
<th scope="col"># designated</th>
<th scope="col"># assigned</th>
<th class="desc-td" scope="col">Description</th>
<th class="desc-td" scope="col">WHO Name</th>
</tr>
</thead>
{% for c in site.data.lineages %}
{% assign child = c.name %}
{% assign row = site.data.lineage_data[child] %}
<tr>
{% if row["Lineage"] contains "*" %}
<td> {{ row["Lineage"] }} </td>
{% else %}
<td><a href="./lineage.html?lineage={{ child }}">{{ row["Lineage"] }}</a> </td>
{% endif %}
<td>{{ row["Countries"] }}</td>
<td>{{ row["Earliest date"] }}</td>
<td>{{ row["Number designated"] }}</td>
<td>{{ row["Number assigned"] }}</td>
<td class="desc-td" >{{ row["Description"] }}</td>
<div id="who_wrapper"><td id="who_{{ row['Lineage'] }}"></td></div>
</tr>
{% endfor %}
</table>
</div>
<script type="text/javascript">
var relevantDefs = new Map();
getOtherNames=function(lineage) {
console.log(lineage);
if(relevantDefs.get(lineage) == true) {
var pageName = "c" + lineage + ".json";
var directory = "https://raw.githubusercontent.com/cov-lineages/constellations/main/constellations/definitions/";
d3.json(directory + pageName, function(json){
whoName = json["variant"]["WHO_label"];
// add to UI
if(whoName && whoName.length > 0) {
var id = "who_" + lineage;
id = id.replace(/\./g, "_");
$("#" + id).text(whoName);
console.log($("#" + id));
}
});
}
}
var url = "https://api.github.com/repos/cov-lineages/constellations/contents/constellations/definitions"
d3.json(url, function(json){
for(var c of json) {
var name = c.name;
console.log(name);
name = name.split("\.json")[0];
console.log(name);
name = name.substring(1);
console.log(name);
relevantDefs.set(name, true);
}
for(var row of $("#myTable").children()[1].children) {
var child = row.children[6];
var id = child.id;
var lineage = id.split("who_")[1];
id = id.replace(/\./g, "_");
child.setAttribute("id", id);
getOtherNames(lineage);
}
});
</script>