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Why the psudotime of my root cell is not zero? #708

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wanglu2014 opened this issue Mar 18, 2024 · 0 comments
Open

Why the psudotime of my root cell is not zero? #708

wanglu2014 opened this issue Mar 18, 2024 · 0 comments
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wanglu2014 commented Mar 18, 2024 •
edited

cds <- order_cells(cds,root_cells = 'cell1')
The expression matrix in this toy example was a 150cell*7gene full matrix with number. This example is crucial for our study, which can not be enlarged.
How can I make sure psudotime of my root cell is zero, and psudotime start from it.
@wanglu2014 wanglu2014 added the bug Something isn't working label Mar 18, 2024
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