Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

plot_cells_3d() display colData values when hovering over cells #697

Open
Sgonzal97 opened this issue Feb 2, 2024 · 0 comments
Open

plot_cells_3d() display colData values when hovering over cells #697

Sgonzal97 opened this issue Feb 2, 2024 · 0 comments

Comments

@Sgonzal97
Copy link

Sgonzal97 commented Feb 2, 2024

When calling plot_cells_3d() and coloring the umap by the expression of a gene of interest, it would be nice to know more about what cells are expressing that gene. Currently, this requires calling plot_cells_3d() again, but coloring the cells by cell type (or timepoint, cluster, etc), and re-orienting yourself in the plotly window to find the cells from your previous window.

In addition, hovering over a cell reveals "trace 0" if that cell is expressing the gene of interest, or "trace 1" if it is not. This doesn't give us any new information that we can't already see.

I think that plot_cells_3d() would be more intuitive if hovering over a cell displayed that cell's value for a colData col of our choice - coloring cells by gene expression, but hovering reveals a timepoint value, or a cell type, or cluster value, or drug treatment, etc.

Screenshot 2024-02-02 at 10 05 11 AM

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
None yet
Projects
None yet
Development

No branches or pull requests

1 participant