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Error in plot_genes_in_pseudotime #689

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sunxw123 opened this issue Nov 3, 2023 · 1 comment
Open

Error in plot_genes_in_pseudotime #689

sunxw123 opened this issue Nov 3, 2023 · 1 comment
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@sunxw123
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sunxw123 commented Nov 3, 2023

when I run the following code in monocle3:
plot_genes_in_pseudotime(cds[Track_genes_sig,], color_cells_by="pseudotime",
min_expr=0.5, ncol = 2)

always return the error informations:
Error in plot_genes_in_pseudotime(cds[Track_genes_sig, ], color_cells_by = "pseudotime", :
unused argument (color_cells_by = "pseudotime")

I don't known how to solve this bug
@sunxw123 sunxw123 added the bug Something isn't working label Nov 3, 2023
@602753090
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Maybe you should use monocle3::plot_genes_in_pseudotime(cds[Track_genes_sig,], color_cells_by="pseudotime",
min_expr=0.5, ncol = 2)

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@602753090 @sunxw123