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namelist_WED12
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namelist_WED12
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!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!
! N. Jourdain, IGE-CNRS, Feb. 2017
!
! namelist for pre-processing NEMO simulations
!
! CB: updated for WED12 simulations (Feb, 2019)
!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!
!-------------------------------------------------------------------------------------------------------------------------------
&general
config = 'WED12' ! config name, e.g. 'WED12', 'AMU12', etc
config_dir = '/nerc/n02/n02/chbull/nemo/bld_configs/input_WED12_CORE' ! dir where new netcdf files will be stored
/
!--------------------------------------------------------------------------------------------
&griddata
file_in_bathy_extract = '/nerc/n02/n02/chbull/nemo/bld_configs/input_WED12_Ute/eORCA12_bathymetry_v2.4.nc' ! Bathy on the grid from which we extract the regional domain (e.g. eORCA12).
file_in_coord_extract = '/nerc/n02/n02/chbull/nemo/bld_configs/input_WED12_Ute/eORCA12_coordinates.nc' ! Coordinates of grid from which we extract regional domain (e.g. eORCA12).
ln_coarse_bdy = .true. ! true if coarser simulation is applied along
! the boundaries (then fill file_in_bathy_bdy)
file_in_bathy_bdy = '/nerc/n02/n02/chbull/nemo/bld_configs/input_WED12_mathiot_eORCA025-GO7/eORCA025_bathymetry_isf_v2.3.nc' ! Bathy on the grid corresponding to the lateral boundary conditions (e.g. ORCA025).
ln_isfcav = .true. ! true if the domain includes ice shelves.
! Choose the domain bounds on eORCA12 grid (WARNING: will be rounded to closest point of the coarse grid if ln_coarse_bdy = true) :
nn_imin_extract = 2464
nn_imax_extract = 3417
nn_jmin_extract = 151
nn_jmax_extract = 1122
! Choose latitude and longitude near which you know that the two grids match
rn_latref = -44.0
rn_lonref = 10.0
/
!-------------------------------------------------------------------------------------------------------------------------------
&init
nn_init = 2 ! 1 -> initial state is an extraction from the corresponding global/large-scale grid [ if ln_coarse_bdy = false ]
! 2 -> initial state from coarser resolution [ if ln_coarse_bdy = true ]
file_in_mask_extract = '/nerc/n02/n02/chbull/nemo/bld_configs/input_WED12_mathiot_eORCA025-GO7/mesh_mask_eORCA025-GO7.nc' ! Global/large-scale file, according to nn_init
! (contains tmask, nav_lat, nav_lon, nav_lev)
file_in_T = '/nerc/n02/n02/chbull/RawData/mi-an854/onm.nc.file/mi-an854o_1m_19760301_19760331_grid_T.nc' ! Temperature (same grid as file_in_mask_extract)
file_in_S = '/nerc/n02/n02/chbull/RawData/mi-an854/onm.nc.file/mi-an854o_1m_19760301_19760331_grid_T.nc' ! Salinity (same grid as file_in_mask_extract)
nn_eosmatch = 0 ! match between model equ. of state and istate equ. of state :
! = 0, regional config in TEOS-10 but file_in_T and file_in_S in EOS-80
! = 1, same equation of state everywhere
nn_iter = 80 ! [optional] nb of iteration for closest neighbour (default=5)
nn_rsmax = 5 ! [optional] nb of points to look for horizontally closest neighbour (in one iteration)
nn_rzmax = 1 ! [optional] nb of points to look for vertically closest neighbour (in one iteration, after horizontal search)
rn_temp = -1.9 ! default temperature (if no close neighbour after nn_iter iterations)
rn_sal = 34.5 ! default salinity (if no close neighbour after nn_iter iterations)
nn_smooth = 3 ! size of the box for running mean (=1 for no smoothing, 3,5,7,... for more smoothing)
/
!-------------------------------------------------------------------------------------------------------------------------------
&bdy
nn_bdy_east = 1 ! number of along-Y segments constituting the EASTERN boundary
nn_bdy_west = 1 ! number of along-Y segments constituting the WESTERN boundary
nn_bdy_north = 2 ! number of along-X segments constituting the NORTHERN boundary
nn_bdy_south = 0 ! number of along-X segments constituting the SOUTHERN boundary
nn_harm = 4 ! number of tidal harmonics to prescribe along the boundaries (0 if no tides in use)
/
!-------------------------------------------------------------------------------------------------------------------------------
&bdy_east
ii_bdy_east(1) = 959 ! i-index for eastern boundary (ocean T-pt, standard = mx-1)
j1_bdy_east(1) = 600 ! lowest j-index for eastern boundary (ocean T-pt, standard = 2)
j2_bdy_east(1) = 977 ! highest j-index for eastern boundary (ocean T-pt, standard = my-1)
/
!-------------------------------------------------------------------------------------------------------------------------------
&bdy_west
ii_bdy_west(1) = 323 ! i-index for western boundary (ocean T-pt, standard = 2)
j1_bdy_west(1) = 900 ! lowest j-index for western boundary (ocean T-pt, standard = 2)
j2_bdy_west(1) = 977 ! highest j-index for western boundary (ocean T-pt, standard = my-1)
/
!-------------------------------------------------------------------------------------------------------------------------------
&bdy_north
i1_bdy_north(1) = 296 ! lowest i-index for northern boundary (ocean T-pt, standard = 2, or = 3 if full bdy_west)
i2_bdy_north(1) = 322 ! highest i-index for northern boundary (ocean T-pt, standard = mx-1, or = mx-2 if full bdy_east)
jj_bdy_north(1) = 899 ! j-index for northern boundary (ocean T-pt, standard = my-1)
!---
i1_bdy_north(2) = 324
i2_bdy_north(2) = 958
jj_bdy_north(2) = 977
/
!-------------------------------------------------------------------------------------------------------------------------------
&bdy_south
i1_bdy_south(1) = 0 ! lowest i-index for southern boundary (ocean T-pt, standard = 2, or = 3 if full bdy_west)
i2_bdy_south(1) = 0 ! highest i-index for southern boundary (ocean T-pt, standard = mx-1, or = mx-2 if full bdy_east)
jj_bdy_south(1) = 0 ! j-index for southern boundary (ocean T-pt, standard = 2)
/
!-------------------------------------------------------------------------------------------------------------------------------
&bdy_data
! Dataset used as lateral boundary conditions (same grid as file_in_mask_extract and as file_in_bathy_bdy if it is used)
! The dataset is assumed to be in files of one of the following types (YYYY is 4-digit year, MM 2-digit month and DD 2-digit day):
!
! <data_dir>/YYYY/<data_prefix>YYYY<sep1>MM<sep2>DD<data_suffix>.nc
! or: <data_dir>/YYYY/<data_prefix>YYYY<sep1>MM<data_suffix>.nc
! or: <data_dir>/<data_prefix>YYYY<sep1>MM<sep2>DD<data_suffix>.nc
! or: <data_dir>/<data_prefix>YYYY<sep1>MM<data_suffix>.nc
!
data_dir = '/nerc/n02/n02/chbull/nemo/bld_configs/input_WED12_CORE/bdy_data'
data_prefix = 'mi-an854o_1m_'
data_suffix_T = '_grid_T' ! suffix for temperature
data_suffix_S = '_grid_T' ! suffix for salinity
data_suffix_U = '_grid_U' ! suffix for zonal velocity
data_suffix_V = '_grid_V' ! suffix for meridional velocity
data_suffix_ssh = '_grid_T' ! suffix for SSH
data_suffix_ice = '_interp_icemodrdy'! suffix for sea ice variables
sep1 = 'yyy'
sep2 = 'xxx'
file_data_mask = '/nerc/n02/n02/chbull/nemo/bld_configs/input_WED12_mathiot_eORCA025-GO7/mesh_mask_eORCA025-GO7.nc' ! Mask for global/large-scale file
! (contains umask, vmask)
file_data_zgr = '/nerc/n02/n02/chbull/nemo/bld_configs/input_WED12_mathiot_eORCA025-GO7/mesh_mask_eORCA025-GO7.nc' ! Vertical mesh sizes (for btp vel.)
! (contains e3u_0 or e3u and e3v_0 or e3v)
file_data_hgr = '/nerc/n02/n02/chbull/nemo/bld_configs/input_WED12_mathiot_eORCA025-GO7/mesh_mask_eORCA025-GO7.nc' ! Horizontal mesh sizes (for btp vel.)
nn_yeari = 1976 ! initial year for BDYs
nn_yearf = 2005 ! final year for BDYs
nn_bdy_eosmatch = 0 ! match between model equ. of state and BDY equ. of state :
! = 0, regional config in TEOS-10 but file_in_T and file_in_S in EOS-80
! = 1, same equation of state everywhere
/
!-------------------------------------------------------------------------------------------------------------------------------
&bdy_tide
tide_dir = '/nerc/n02/n02/chbull/nemo/bld_configs/input_WED12_Ute/FES2012'
! name of the nn_harm tidal constituents :
harm( 1) = 'M2 ' ! name of 1st tidal constituent (4 characters)
harm( 2) = 'S2 ' ! name of 2nd tidal constituent (4 characters)
harm( 3) = 'K1 ' ! " " "
harm( 4) = 'O1 ' ! " " "
/
!-------------------------------------------------------------------------------------------------------------------------------
&sss_resto
! Dataset used as lateral boundary conditions (same grid as file_in_mask_extract and as file_in_bathy_bdy if it is used)
! The sss dataset is assumed to be in files of one of the following types (YYYY is 4-digit year, MM 2-digit month and DD 2-digit day):
! <sss_dir>/YYYY/<sss_prefix>_YYYY_MM_DD_<sss_suffix>.nc
! <sss_dir>/YYYY/<sss_prefix>_YYYY_MM_<sss_suffix>.nc
! <sss_dir>/YYYY/<sss_prefix>_YYYY_MM_DD.nc
! <sss_dir>/YYYY/<sss_prefix>_YYYY_MM.nc
! <sss_dir>/<sss_prefix>_YYYY_MM_DD_<sss_suffix>.nc
! <sss_dir>/<sss_prefix>_YYYY_MM_<sss_suffix>.nc
! <sss_dir>/<sss_prefix>_YYYY_MM_DD.nc
! <sss_dir>/<sss_prefix>_YYYY_MM.nc
! <sss_dir>/YYYY/<sss_prefix>_YYYYMMDD_<sss_suffix>.nc
! <sss_dir>/YYYY/<sss_prefix>_YYYYMM_<sss_suffix>.nc
! <sss_dir>/YYYY/<sss_prefix>_YYYYMMDD.nc
! <sss_dir>/YYYY/<sss_prefix>_YYYYMM.nc
! <sss_dir>/<sss_prefix>_YYYYMMDD_<sss_suffix>.nc
! <sss_dir>/<sss_prefix>_YYYYMM_<sss_suffix>.nc
! <sss_dir>/<sss_prefix>_YYYYMMDD.nc
! <sss_dir>/<sss_prefix>_YYYYMM.nc
sss_dir = '/store/njourd/SOUTHG2V3'
sss_prefix = 'SOUTHG2V3'
sss_suffix = 'gridS'
nn_sss_yeari = 1976 ! First year to proceed
nn_sss_yearf = 2005 ! Last year to proceed
nn_sss_eosmatch = 0 ! match between model equ. of state and SSS restoring file :
! = 0, regional config in TEOS-10 but SSS file in EOS-80
! = 1, same equation of state everywhere
file_sss_mask = '/fs2/n02/n02/chbull/nemo/bld_configs/input_WED12_mathiot_eORCA025-GO7/mesh_mask_eORCA025-GO7.nc' ! Mask for global/large-scale file
! (contains tmask)
/
!-------------------------------------------------------------------------------------------------------------------------------
&runoff
! Dataset used as lateral boundary conditions (same grid as file_in_mask_extract and as file_in_bathy_bdy if it is used)
! The sss dataset is assumed to be in files of one of the following types (YYYY is 4-digit year, MM 2-digit month and DD 2-digit day):
!
! <rrr_dir>/YYYY/<rrr_prefix>YYYY<rrr_sep1>MM<rrr_sep2>DD<rrr_suffix>.nc
! or: <rrr_dir>/YYYY/<rrr_prefix>YYYY<rrr_sep1>MM<rrr_suffix>.nc
! or: <rrr_dir>/<rrr_prefix>YYYY<rrr_sep1>MM<rrr_sep2>DD<rrr_suffix>.nc
! or: <rrr_dir>/<rrr_prefix>YYYY<rrr_sep1>MM<rrr_suffix>.nc
! or: <rrr_dir>/<rrr_prefix>.nc [ for climatology ]
!
rrr_dir = '/nerc/n02/n02/chbull/nemo/bld_configs/input_WED12_CORE/bdy_data'
rrr_prefix = 'mi-an854o_1m_'
rrr_sep1 = 'yyy'
rrr_sep2 = 'xxx'
rrr_suffix = '_grid_T'
nn_rrr_yeari = 1976 ! First year to proceed
nn_rrr_yearf = 2005 ! Last year to proceed
nn_band = 50 ! Thickness of the band along the coast where we don't do SSS restoring (in nb of grid pts)
file_mask_runoff = '/nerc/n02/n02/chbull/nemo/bld_configs/input_WED12_mathiot_eORCA025-GO7/mesh_mask_eORCA025-GO7.nc' ! mask for global/large-scale file
/
!-------------------------------------------------------------------------------------------------------------------------------
&chloro
file_chloro_in = '/nerc/n02/n02/chbull/nemo/bld_configs/input_WED12_Ute/SOUTHG2V3_ORCA025_chlorophyll.nc' ! runoff for global/large-scale file
rn_chla = 0.30 ! default CHLA (to fill places in the regional domain uncovered in the global file)
/