Help!!! Segmentation fault (core dumped)

[ajkshdkjahdka]

(hifiasm) v001@vmware001:~/work_path/SRB$ hifiasm --primary -o PRE -l0 -t 20 SRB.hifi.fa hifi_2.fasta
[M::ha_analyze_count] lowest: count[8] = 1423374
[M::ha_analyze_count] highest: count[104] = 30190676
[M::ha_hist_line] 2: *************************************************************************************************> 33311004
[M::ha_hist_line] 3: ************************** 7935767
[M::ha_hist_line] 4: ************ 3585480
[M::ha_hist_line] 5: ******* 2248580
[M::ha_hist_line] 6: ***** 1655168
[M::ha_hist_line] 7: ***** 1458808
[M::ha_hist_line] 8: ***** 1423374
[M::ha_hist_line] 9: ***** 1461264
[M::ha_hist_line] 10: ***** 1570965
[M::ha_hist_line] 11: ***** 1605940
[M::ha_hist_line] 12: ****** 1670196
[M::ha_hist_line] 13: ****** 1777532
[M::ha_hist_line] 14: ****** 1826926
[M::ha_hist_line] 15: ****** 1877170
[M::ha_hist_line] 16: ****** 1929931
[M::ha_hist_line] 17: ******* 2006206
[M::ha_hist_line] 18: ******* 2111561
[M::ha_hist_line] 19: ******* 2172452
[M::ha_hist_line] 20: ******** 2283887
[M::ha_hist_line] 21: ******** 2433040
[M::ha_hist_line] 22: ******** 2561440
[M::ha_hist_line] 23: ********* 2721257
[M::ha_hist_line] 24: ********** 2927845
[M::ha_hist_line] 25: *********** 3175900
[M::ha_hist_line] 26: *********** 3426877
[M::ha_hist_line] 27: ************ 3742383
[M::ha_hist_line] 28: ************* 4070037
[M::ha_hist_line] 29: *************** 4392830
[M::ha_hist_line] 30: **************** 4768362
[M::ha_hist_line] 31: ***************** 5189410
[M::ha_hist_line] 32: ******************* 5706611
[M::ha_hist_line] 33: ********************* 6256838
[M::ha_hist_line] 34: *********************** 6843458
[M::ha_hist_line] 35: ************************* 7493021
[M::ha_hist_line] 36: *************************** 8166870
[M::ha_hist_line] 37: ****************************** 8911383
[M::ha_hist_line] 38: ******************************** 9667298
[M::ha_hist_line] 39: *********************************** 10499487
[M::ha_hist_line] 40: ************************************** 11439402
[M::ha_hist_line] 41: ***************************************** 12379105
[M::ha_hist_line] 42: ******************************************** 13310924
[M::ha_hist_line] 43: *********************************************** 14187850
[M::ha_hist_line] 44: ************************************************** 14970372
[M::ha_hist_line] 45: **************************************************** 15805377
[M::ha_hist_line] 46: ******************************************************* 16530209
[M::ha_hist_line] 47: ********************************************************* 17061978
[M::ha_hist_line] 48: ********************************************************** 17367084
[M::ha_hist_line] 49: *********************************************************** 17670051
[M::ha_hist_line] 50: *********************************************************** 17770703
[M::ha_hist_line] 51: *********************************************************** 17703049
[M::ha_hist_line] 52: ********************************************************** 17456437
[M::ha_hist_line] 53: ********************************************************* 17065751
[M::ha_hist_line] 54: ******************************************************* 16504061
[M::ha_hist_line] 55: ***************************************************** 15850515
[M::ha_hist_line] 56: ************************************************** 15086708
[M::ha_hist_line] 57: *********************************************** 14224946
[M::ha_hist_line] 58: ******************************************** 13376118
[M::ha_hist_line] 59: ****************************************** 12579918
[M::ha_hist_line] 60: *************************************** 11680012
[M::ha_hist_line] 61: ************************************ 10794195
[M::ha_hist_line] 62: ********************************* 10070847
[M::ha_hist_line] 63: ******************************* 9341108
[M::ha_hist_line] 64: ***************************** 8782241
[M::ha_hist_line] 65: *************************** 8272560
[M::ha_hist_line] 66: ************************** 7878206
[M::ha_hist_line] 67: ************************* 7617422
[M::ha_hist_line] 68: ************************* 7436705
[M::ha_hist_line] 69: ************************ 7318365
[M::ha_hist_line] 70: ************************ 7254821
[M::ha_hist_line] 71: ************************ 7342519
[M::ha_hist_line] 72: ************************* 7534317
[M::ha_hist_line] 73: ************************** 7773948
[M::ha_hist_line] 74: *************************** 8169083
[M::ha_hist_line] 75: **************************** 8587182
[M::ha_hist_line] 76: ****************************** 9082359
[M::ha_hist_line] 77: ******************************** 9595164
[M::ha_hist_line] 78: ********************************** 10217736
[M::ha_hist_line] 79: ************************************ 10876931
[M::ha_hist_line] 80: ************************************** 11569972
[M::ha_hist_line] 81: ***************************************** 12324665
[M::ha_hist_line] 82: ******************************************** 13173223
[M::ha_hist_line] 83: ********************************************** 14037041
[M::ha_hist_line] 84: ************************************************** 14975639
[M::ha_hist_line] 85: ***************************************************** 15865016
[M::ha_hist_line] 86: ******************************************************** 16879602
[M::ha_hist_line] 87: *********************************************************** 17824824
[M::ha_hist_line] 88: ************************************************************** 18798366
[M::ha_hist_line] 89: ****************************************************************** 19810348
[M::ha_hist_line] 90: ********************************************************************* 20937018
[M::ha_hist_line] 91: ************************************************************************* 21980928
[M::ha_hist_line] 92: **************************************************************************** 23034620
[M::ha_hist_line] 93: ******************************************************************************** 24029332
[M::ha_hist_line] 94: *********************************************************************************** 24992823
[M::ha_hist_line] 95: ************************************************************************************** 25994716
[M::ha_hist_line] 96: ***************************************************************************************** 26824051
[M::ha_hist_line] 97: ******************************************************************************************** 27646612
[M::ha_hist_line] 98: ********************************************************************************************** 28369143
[M::ha_hist_line] 99: ************************************************************************************************ 28922338
[M::ha_hist_line] 100: ************************************************************************************************* 29429850
[M::ha_hist_line] 101: *************************************************************************************************** 29794103
[M::ha_hist_line] 102: *************************************************************************************************** 30019535
[M::ha_hist_line] 103: **************************************************************************************************** 30157864
[M::ha_hist_line] 104: **************************************************************************************************** 30190676
[M::ha_hist_line] 105: *************************************************************************************************** 29997276
[M::ha_hist_line] 106: ************************************************************************************************** 29625988
[M::ha_hist_line] 107: ************************************************************************************************* 29169029
[M::ha_hist_line] 108: ********************************************************************************************** 28523869
[M::ha_hist_line] 109: ******************************************************************************************** 27776066
[M::ha_hist_line] 110: ***************************************************************************************** 26916989
[M::ha_hist_line] 111: ************************************************************************************** 25865421
[M::ha_hist_line] 112: ********************************************************************************** 24791478
[M::ha_hist_line] 113: ******************************************************************************* 23710729
[M::ha_hist_line] 114: *************************************************************************** 22564009
[M::ha_hist_line] 115: ********************************************************************** 21214078
[M::ha_hist_line] 116: ****************************************************************** 19906512
[M::ha_hist_line] 117: ************************************************************* 18489303
[M::ha_hist_line] 118: ********************************************************* 17182448
[M::ha_hist_line] 119: ***************************************************** 15875174
[M::ha_hist_line] 120: ************************************************ 14545934
[M::ha_hist_line] 121: ******************************************** 13266407
[M::ha_hist_line] 122: **************************************** 12042062
[M::ha_hist_line] 123: ************************************ 10838021
[M::ha_hist_line] 124: ******************************** 9721696
[M::ha_hist_line] 125: ***************************** 8685724
[M::ha_hist_line] 126: ************************** 7724700
[M::ha_hist_line] 127: *********************** 6868552
[M::ha_hist_line] 128: ******************** 6080453
[M::ha_hist_line] 129: ****************** 5324941
[M::ha_hist_line] 130: *************** 4662029
[M::ha_hist_line] 131: ************* 4025988
[M::ha_hist_line] 132: *********** 3441055
[M::ha_hist_line] 133: ********** 2900657
[M::ha_hist_line] 134: ******** 2457906
[M::ha_hist_line] 135: ******* 2085630
[M::ha_hist_line] 136: ****** 1769232
[M::ha_hist_line] 137: ***** 1502998
[M::ha_hist_line] 138: **** 1253418
[M::ha_hist_line] 139: **** 1066259
[M::ha_hist_line] 140: *** 886740
[M::ha_hist_line] 141: ** 739831
[M::ha_hist_line] 142: ** 631789
[M::ha_hist_line] 143: ** 535897
[M::ha_hist_line] 144: * 444382
[M::ha_hist_line] 145: * 389605
[M::ha_hist_line] 146: * 341943
[M::ha_hist_line] 147: * 297230
[M::ha_hist_line] 148: * 259990
[M::ha_hist_line] 149: * 235421
[M::ha_hist_line] 150: * 215649
[M::ha_hist_line] 151: * 192976
[M::ha_hist_line] 152: * 181332
[M::ha_hist_line] 153: * 165798
[M::ha_hist_line] 154: * 151791
[M::ha_hist_line] rest: ************************************************ 14595295
[M::ha_analyze_count] left: count[50] = 17770703
[M::ha_analyze_count] right: none
[M::ha_ft_gen] peak_hom: 104; peak_het: 50
[M::ha_ct_shrink::4452.1665.22] ==> counted 2622431 distinct minimizer k-mers
[M::ha_ft_gen::4455.5655.22@49.421GB] ==> filtered out 2622431 k-mers occurring 520 or more times
[M::ha_opt_update_cov] updated max_n_chain to 520
[M::yak_count] collected 2627153458 minimizers
[M::yak_count] collected 3276559328 minimizers
[M::ha_pt_gen::5472.0277.60] ==> counted 130988696 distinct minimizer k-mers
[M::ha_pt_gen] count[4095] = 0 (for sanity check)
[M::ha_analyze_count] lowest: count[8] = 69430
[M::ha_analyze_count] highest: count[103] = 1177159
[M::ha_hist_line] 1: ****************************************************************************************************> 58961137
[M::ha_hist_line] 2: ************************************************************************************************> 2219886
[M::ha_hist_line] 3: ***************************************** 478731
[M::ha_hist_line] 4: ***************** 196146
[M::ha_hist_line] 5: ********** 118308
[M::ha_hist_line] 6: ******* 85537
[M::ha_hist_line] 7: ****** 73657
[M::ha_hist_line] 8: ****** 69430
[M::ha_hist_line] 9: ****** 69724
[M::ha_hist_line] 10: ****** 73298
[M::ha_hist_line] 11: ****** 72784
[M::ha_hist_line] 12: ****** 76059
[M::ha_hist_line] 13: ******* 80070
[M::ha_hist_line] 14: ******* 81976
[M::ha_hist_line] 15: ******* 83785
[M::ha_hist_line] 16: ******* 86290
[M::ha_hist_line] 17: ******** 89952
[M::ha_hist_line] 18: ******** 95306
[M::ha_hist_line] 19: ******** 97905
[M::ha_hist_line] 20: ********* 103416
[M::ha_hist_line] 21: ********* 110180
[M::ha_hist_line] 22: ********** 116252
[M::ha_hist_line] 23: *********** 124585
[M::ha_hist_line] 24: *********** 134955
[M::ha_hist_line] 25: ************ 146323
[M::ha_hist_line] 26: ************* 157629
[M::ha_hist_line] 27: *************** 171524
[M::ha_hist_line] 28: **************** 187449
[M::ha_hist_line] 29: ***************** 202196
[M::ha_hist_line] 30: ******************* 220052
[M::ha_hist_line] 31: ******************** 240453
[M::ha_hist_line] 32: ********************** 264490
[M::ha_hist_line] 33: ************************* 288859
[M::ha_hist_line] 34: *************************** 316426
[M::ha_hist_line] 35: ****************************** 347675
[M::ha_hist_line] 36: ******************************** 378788
[M::ha_hist_line] 37: *********************************** 412890
[M::ha_hist_line] 38: ************************************** 448216
[M::ha_hist_line] 39: ***************************************** 487282
[M::ha_hist_line] 40: ********************************************* 531217
[M::ha_hist_line] 41: ************************************************* 574541
[M::ha_hist_line] 42: **************************************************** 617155
[M::ha_hist_line] 43: ******************************************************** 655391
[M::ha_hist_line] 44: *********************************************************** 692479
[M::ha_hist_line] 45: ************************************************************** 728823
[M::ha_hist_line] 46: ***************************************************************** 761198
[M::ha_hist_line] 47: ******************************************************************* 785388
[M::ha_hist_line] 48: ******************************************************************** 797179
[M::ha_hist_line] 49: ********************************************************************* 810502
[M::ha_hist_line] 50: ********************************************************************* 812958
[M::ha_hist_line] 51: ********************************************************************* 808231
[M::ha_hist_line] 52: ******************************************************************** 796459
[M::ha_hist_line] 53: ****************************************************************** 775731
[M::ha_hist_line] 54: **************************************************************** 747549
[M::ha_hist_line] 55: ************************************************************* 714950
[M::ha_hist_line] 56: ********************************************************** 678545
[M::ha_hist_line] 57: ****************************************************** 637146
[M::ha_hist_line] 58: *************************************************** 596368
[M::ha_hist_line] 59: *********************************************** 556392
[M::ha_hist_line] 60: ******************************************** 514665
[M::ha_hist_line] 61: **************************************** 472421
[M::ha_hist_line] 62: ************************************* 436784
[M::ha_hist_line] 63: ********************************** 403100
[M::ha_hist_line] 64: ******************************** 375393
[M::ha_hist_line] 65: ****************************** 351250
[M::ha_hist_line] 66: **************************** 331859
[M::ha_hist_line] 67: *************************** 317320
[M::ha_hist_line] 68: ************************** 307914
[M::ha_hist_line] 69: ************************* 299975
[M::ha_hist_line] 70: ************************* 295167
[M::ha_hist_line] 71: ************************* 298462
[M::ha_hist_line] 72: ************************** 304014
[M::ha_hist_line] 73: *************************** 313045
[M::ha_hist_line] 74: **************************** 328677
[M::ha_hist_line] 75: ***************************** 344257
[M::ha_hist_line] 76: ******************************* 364085
[M::ha_hist_line] 77: ********************************* 384784
[M::ha_hist_line] 78: *********************************** 408211
[M::ha_hist_line] 79: ************************************* 434433
[M::ha_hist_line] 80: *************************************** 463216
[M::ha_hist_line] 81: ****************************************** 490871
[M::ha_hist_line] 82: ********************************************* 526079
[M::ha_hist_line] 83: ************************************************ 560453
[M::ha_hist_line] 84: *************************************************** 597479
[M::ha_hist_line] 85: ****************************************************** 632387
[M::ha_hist_line] 86: ********************************************************* 672226
[M::ha_hist_line] 87: ************************************************************ 709937
[M::ha_hist_line] 88: *************************************************************** 746947
[M::ha_hist_line] 89: ******************************************************************* 787100
[M::ha_hist_line] 90: *********************************************************************** 830269
[M::ha_hist_line] 91: ************************************************************************** 872678
[M::ha_hist_line] 92: ****************************************************************************** 912659
[M::ha_hist_line] 93: ********************************************************************************* 951150
[M::ha_hist_line] 94: ************************************************************************************ 988468
[M::ha_hist_line] 95: *************************************************************************************** 1024707
[M::ha_hist_line] 96: ****************************************************************************************** 1057904
[M::ha_hist_line] 97: ********************************************************************************************* 1090583
[M::ha_hist_line] 98: *********************************************************************************************** 1115805
[M::ha_hist_line] 99: ************************************************************************************************* 1136988
[M::ha_hist_line] 100: ************************************************************************************************** 1156438
[M::ha_hist_line] 101: *************************************************************************************************** 1167196
[M::ha_hist_line] 102: **************************************************************************************************** 1173705
[M::ha_hist_line] 103: **************************************************************************************************** 1177159
[M::ha_hist_line] 104: **************************************************************************************************** 1174618
[M::ha_hist_line] 105: *************************************************************************************************** 1165118
[M::ha_hist_line] 106: ************************************************************************************************** 1150201
[M::ha_hist_line] 107: ************************************************************************************************ 1130488
[M::ha_hist_line] 108: ********************************************************************************************** 1101320
[M::ha_hist_line] 109: ******************************************************************************************* 1071483
[M::ha_hist_line] 110: **************************************************************************************** 1036228
[M::ha_hist_line] 111: ************************************************************************************ 992741
[M::ha_hist_line] 112: ********************************************************************************* 952300
[M::ha_hist_line] 113: ***************************************************************************** 908346
[M::ha_hist_line] 114: ************************************************************************* 860182
[M::ha_hist_line] 115: ********************************************************************* 807740
[M::ha_hist_line] 116: **************************************************************** 755517
[M::ha_hist_line] 117: ************************************************************ 702108
[M::ha_hist_line] 118: ******************************************************* 651302
[M::ha_hist_line] 119: *************************************************** 600167
[M::ha_hist_line] 120: *********************************************** 548420
[M::ha_hist_line] 121: ****************************************** 499805
[M::ha_hist_line] 122: ************************************** 452571
[M::ha_hist_line] 123: *********************************** 406467
[M::ha_hist_line] 124: ******************************* 364522
[M::ha_hist_line] 125: **************************** 325514
[M::ha_hist_line] 126: ************************* 289847
[M::ha_hist_line] 127: ********************** 257856
[M::ha_hist_line] 128: ******************* 226667
[M::ha_hist_line] 129: ***************** 199862
[M::ha_hist_line] 130: *************** 174140
[M::ha_hist_line] 131: ************* 150724
[M::ha_hist_line] 132: *********** 128961
[M::ha_hist_line] 133: ********* 108895
[M::ha_hist_line] 134: ******** 93249
[M::ha_hist_line] 135: ******* 79868
[M::ha_hist_line] 136: ****** 68040
[M::ha_hist_line] 137: ***** 58282
[M::ha_hist_line] 138: **** 49787
[M::ha_hist_line] 139: **** 42619
[M::ha_hist_line] 140: *** 36187
[M::ha_hist_line] 141: *** 30719
[M::ha_hist_line] 142: ** 27348
[M::ha_hist_line] 143: ** 23870
[M::ha_hist_line] 144: ** 20625
[M::ha_hist_line] 145: ** 18705
[M::ha_hist_line] 146: * 16843
[M::ha_hist_line] 147: * 15388
[M::ha_hist_line] 148: * 14123
[M::ha_hist_line] 149: * 13427
[M::ha_hist_line] 150: * 12481
[M::ha_hist_line] 151: * 11820
[M::ha_hist_line] 152: * 11153
[M::ha_hist_line] 153: * 10796
[M::ha_hist_line] 154: * 10364
[M::ha_hist_line] 155: * 10175
[M::ha_hist_line] 156: * 9818
[M::ha_hist_line] 157: * 9793
[M::ha_hist_line] 158: * 9510
[M::ha_hist_line] 159: * 9119
[M::ha_hist_line] 160: * 8880
[M::ha_hist_line] 161: * 8710
[M::ha_hist_line] 162: * 8673
[M::ha_hist_line] 163: * 8334
[M::ha_hist_line] 164: * 8375
[M::ha_hist_line] 165: * 8285
[M::ha_hist_line] 166: * 7688
[M::ha_hist_line] 167: * 7900
[M::ha_hist_line] 168: * 7563
[M::ha_hist_line] 169: * 7451
[M::ha_hist_line] 170: * 7358
[M::ha_hist_line] 171: * 7265
[M::ha_hist_line] 172: * 7235
[M::ha_hist_line] 173: * 6992
[M::ha_hist_line] 174: * 6927
[M::ha_hist_line] 175: * 6789
[M::ha_hist_line] 176: * 6753
[M::ha_hist_line] 177: * 6839
[M::ha_hist_line] 178: * 6767
[M::ha_hist_line] 179: * 6649
[M::ha_hist_line] 180: * 6698
[M::ha_hist_line] 181: * 6722
[M::ha_hist_line] 182: * 6700
[M::ha_hist_line] 183: * 6532
[M::ha_hist_line] 184: * 6682
[M::ha_hist_line] 185: * 6720
[M::ha_hist_line] 186: * 6585
[M::ha_hist_line] 187: * 6591
[M::ha_hist_line] 188: * 6642
[M::ha_hist_line] 189: * 6801
[M::ha_hist_line] 190: * 6812
[M::ha_hist_line] 191: * 6758
[M::ha_hist_line] 192: * 6880
[M::ha_hist_line] 193: * 6862
[M::ha_hist_line] 194: * 7082
[M::ha_hist_line] 195: * 6996
[M::ha_hist_line] 196: * 6955
[M::ha_hist_line] 197: * 6884
[M::ha_hist_line] 198: * 6905
[M::ha_hist_line] 199: * 6840
[M::ha_hist_line] 200: * 7135
[M::ha_hist_line] 201: * 6932
[M::ha_hist_line] 202: * 6903
[M::ha_hist_line] 203: * 6921
[M::ha_hist_line] 204: * 7058
[M::ha_hist_line] 205: * 6871
[M::ha_hist_line] 206: * 6716
[M::ha_hist_line] 207: * 6655
[M::ha_hist_line] 208: * 6620
[M::ha_hist_line] 209: * 6660
[M::ha_hist_line] 210: * 6432
[M::ha_hist_line] 211: * 6548
[M::ha_hist_line] 212: * 6316
[M::ha_hist_line] 213: * 6127
[M::ha_hist_line] 214: * 6109
[M::ha_hist_line] rest: ******************************************** 517351
[M::ha_analyze_count] left: count[50] = 812958
[M::ha_analyze_count] right: none
[M::ha_pt_gen] peak_hom: 103; peak_het: 50
[M::ha_ct_shrink::5472.5417.60] ==> counted 72027559 distinct minimizer k-mers
[M::ha_pt_gen::] counting in normal mode
[M::yak_count] collected 5903712786 minimizers
[M::yak_count] collected 0 minimizers
[M::ha_pt_gen::6485.0469.36] ==> indexed 5844751649 positions, counted 72027559 distinct minimizer k-mers
[M::ha_assemble::61032.29318.86@109.451GB] ==> corrected reads for round 1
[M::ha_assemble] # bases: 214651305779; # corrected bases: 369528456; # recorrected bases: 261550
[M::ha_assemble] size of buffer: 2.474GB
[M::yak_count] collected 5901812603 minimizers
[M::yak_count] collected 0 minimizers
[M::ha_pt_gen::62033.54718.84] ==> counted 76080526 distinct minimizer k-mers
[M::ha_pt_gen] count[4095] = 0 (for sanity check)
[M::ha_analyze_count] lowest: count[7] = 57926
[M::ha_analyze_count] highest: count[104] = 1174552
[M::ha_hist_line] 1: ************************************************************************************************> 6032684
[M::ha_hist_line] 2: ********************************************************* 668217
[M::ha_hist_line] 3: ******************** 239496
[M::ha_hist_line] 4: *********** 125735
[M::ha_hist_line] 5: ******* 83715
[M::ha_hist_line] 6: ***** 63562
[M::ha_hist_line] 7: ***** 57926
[M::ha_hist_line] 8: ***** 57999
[M::ha_hist_line] 9: ***** 59969
[M::ha_hist_line] 10: ****** 65778
[M::ha_hist_line] 11: ****** 67177
[M::ha_hist_line] 12: ****** 70552
[M::ha_hist_line] 13: ****** 75823
[M::ha_hist_line] 14: ******* 78211
[M::ha_hist_line] 15: ******* 80145
[M::ha_hist_line] 16: ******* 83867
[M::ha_hist_line] 17: ******* 86553
[M::ha_hist_line] 18: ******** 92201
[M::ha_hist_line] 19: ******** 95498
[M::ha_hist_line] 20: ********* 99922
[M::ha_hist_line] 21: ********* 106151
[M::ha_hist_line] 22: ********** 113063
[M::ha_hist_line] 23: ********** 119853
[M::ha_hist_line] 24: *********** 130154
[M::ha_hist_line] 25: ************ 141371
[M::ha_hist_line] 26: ************* 152517
[M::ha_hist_line] 27: ************** 165345
[M::ha_hist_line] 28: *************** 178183
[M::ha_hist_line] 29: ***************** 195369
[M::ha_hist_line] 30: ****************** 211697
[M::ha_hist_line] 31: ******************* 228451
[M::ha_hist_line] 32: ********************** 252666
[M::ha_hist_line] 33: ************************ 277396
[M::ha_hist_line] 34: ************************** 301779
[M::ha_hist_line] 35: **************************** 330829
[M::ha_hist_line] 36: ******************************* 362547
[M::ha_hist_line] 37: ********************************** 395891
[M::ha_hist_line] 38: ************************************* 428753
[M::ha_hist_line] 39: **************************************** 464864
[M::ha_hist_line] 40: ******************************************* 508873
[M::ha_hist_line] 41: *********************************************** 550622
[M::ha_hist_line] 42: ************************************************** 592879
[M::ha_hist_line] 43: ****************************************************** 635295
[M::ha_hist_line] 44: ********************************************************* 668991
[M::ha_hist_line] 45: ************************************************************ 708630
[M::ha_hist_line] 46: *************************************************************** 743047
[M::ha_hist_line] 47: ****************************************************************** 770350
[M::ha_hist_line] 48: ******************************************************************* 785107
[M::ha_hist_line] 49: ******************************************************************** 801391
[M::ha_hist_line] 50: ********************************************************************* 808316
[M::ha_hist_line] 51: ********************************************************************* 808436
[M::ha_hist_line] 52: ******************************************************************** 799684
[M::ha_hist_line] 53: ******************************************************************* 781128
[M::ha_hist_line] 54: ***************************************************************** 758710
[M::ha_hist_line] 55: ************************************************************** 728468
[M::ha_hist_line] 56: *********************************************************** 694985
[M::ha_hist_line] 57: ******************************************************** 654767
[M::ha_hist_line] 58: **************************************************** 613947
[M::ha_hist_line] 59: ************************************************* 576103
[M::ha_hist_line] 60: ********************************************** 534657
[M::ha_hist_line] 61: ****************************************** 490578
[M::ha_hist_line] 62: *************************************** 453533
[M::ha_hist_line] 63: *********************************** 416440
[M::ha_hist_line] 64: ********************************* 386861
[M::ha_hist_line] 65: ******************************* 361002
[M::ha_hist_line] 66: ***************************** 338352
[M::ha_hist_line] 67: *************************** 320593
[M::ha_hist_line] 68: ************************** 309489
[M::ha_hist_line] 69: ************************* 299466
[M::ha_hist_line] 70: ************************* 292870
[M::ha_hist_line] 71: ************************* 290723
[M::ha_hist_line] 72: ************************* 294805
[M::ha_hist_line] 73: ************************** 300912
[M::ha_hist_line] 74: *************************** 312643
[M::ha_hist_line] 75: **************************** 328640
[M::ha_hist_line] 76: ***************************** 344874
[M::ha_hist_line] 77: ******************************* 364455
[M::ha_hist_line] 78: ********************************* 385455
[M::ha_hist_line] 79: *********************************** 408693
[M::ha_hist_line] 80: ************************************* 435287
[M::ha_hist_line] 81: *************************************** 462735
[M::ha_hist_line] 82: ****************************************** 492532
[M::ha_hist_line] 83: ********************************************* 526249
[M::ha_hist_line] 84: ************************************************ 562183
[M::ha_hist_line] 85: *************************************************** 595834
[M::ha_hist_line] 86: ****************************************************** 635751
[M::ha_hist_line] 87: ********************************************************* 672156
[M::ha_hist_line] 88: ************************************************************ 706878
[M::ha_hist_line] 89: *************************************************************** 744244
[M::ha_hist_line] 90: ******************************************************************* 787498
[M::ha_hist_line] 91: *********************************************************************** 828093
[M::ha_hist_line] 92: ************************************************************************** 869831
[M::ha_hist_line] 93: ***************************************************************************** 909683
[M::ha_hist_line] 94: ********************************************************************************* 947919
[M::ha_hist_line] 95: ************************************************************************************ 986324
[M::ha_hist_line] 96: *************************************************************************************** 1019578
[M::ha_hist_line] 97: ****************************************************************************************** 1054989
[M::ha_hist_line] 98: ******************************************************************************************** 1085038
[M::ha_hist_line] 99: *********************************************************************************************** 1111710
[M::ha_hist_line] 100: ************************************************************************************************ 1127622
[M::ha_hist_line] 101: ************************************************************************************************** 1148750
[M::ha_hist_line] 102: *************************************************************************************************** 1161353
[M::ha_hist_line] 103: *************************************************************************************************** 1167656
[M::ha_hist_line] 104: **************************************************************************************************** 1174552
[M::ha_hist_line] 105: **************************************************************************************************** 1170153
[M::ha_hist_line] 106: *************************************************************************************************** 1158992
[M::ha_hist_line] 107: ************************************************************************************************* 1143907
[M::ha_hist_line] 108: *********************************************************************************************** 1119677
[M::ha_hist_line] 109: ********************************************************************************************** 1101858
[M::ha_hist_line] 110: ******************************************************************************************* 1066080
[M::ha_hist_line] 111: **************************************************************************************** 1029602
[M::ha_hist_line] 112: ************************************************************************************ 989408
[M::ha_hist_line] 113: ********************************************************************************* 946725
[M::ha_hist_line] 114: ***************************************************************************** 907899
[M::ha_hist_line] 115: ************************************************************************* 860253
[M::ha_hist_line] 116: ********************************************************************* 807588
[M::ha_hist_line] 117: **************************************************************** 753980
[M::ha_hist_line] 118: ************************************************************ 703225
[M::ha_hist_line] 119: ******************************************************* 650572
[M::ha_hist_line] 120: *************************************************** 599931
[M::ha_hist_line] 121: *********************************************** 550581
[M::ha_hist_line] 122: ******************************************* 501274
[M::ha_hist_line] 123: *************************************** 452694
[M::ha_hist_line] 124: *********************************** 408540
[M::ha_hist_line] 125: ******************************* 364887
[M::ha_hist_line] 126: **************************** 328185
[M::ha_hist_line] 127: ************************* 292544
[M::ha_hist_line] 128: ********************** 259774
[M::ha_hist_line] 129: ******************* 228624
[M::ha_hist_line] 130: ***************** 202150
[M::ha_hist_line] 131: *************** 176919
[M::ha_hist_line] 132: ************* 153088
[M::ha_hist_line] 133: *********** 129883
[M::ha_hist_line] 134: ********* 110435
[M::ha_hist_line] 135: ******** 94530
[M::ha_hist_line] 136: ******* 81289
[M::ha_hist_line] 137: ****** 69157
[M::ha_hist_line] 138: ***** 58514
[M::ha_hist_line] 139: **** 50997
[M::ha_hist_line] 140: **** 42938
[M::ha_hist_line] 141: *** 36852
[M::ha_hist_line] 142: *** 31643
[M::ha_hist_line] 143: ** 27930
[M::ha_hist_line] 144: ** 23623
[M::ha_hist_line] 145: ** 20977
[M::ha_hist_line] 146: ** 19041
[M::ha_hist_line] 147: * 17242
[M::ha_hist_line] 148: * 15523
[M::ha_hist_line] 149: * 14258
[M::ha_hist_line] 150: * 13612
[M::ha_hist_line] 151: * 12700
[M::ha_hist_line] 152: * 11729
[M::ha_hist_line] 153: * 11355
[M::ha_hist_line] 154: * 10607
[M::ha_hist_line] 155: * 10247
[M::ha_hist_line] 156: * 10195
[M::ha_hist_line] 157: * 9814
[M::ha_hist_line] 158: * 9864
[M::ha_hist_line] 159: * 9334
[M::ha_hist_line] 160: * 9350
[M::ha_hist_line] 161: * 9074
[M::ha_hist_line] 162: * 8730
[M::ha_hist_line] 163: * 8335
[M::ha_hist_line] 164: * 8403
[M::ha_hist_line] 165: * 8386
[M::ha_hist_line] 166: * 8112
[M::ha_hist_line] 167: * 7848
[M::ha_hist_line] 168: * 7829
[M::ha_hist_line] 169: * 7536
[M::ha_hist_line] 170: * 7197
[M::ha_hist_line] 171: * 7538
[M::ha_hist_line] 172: * 7132
[M::ha_hist_line] 173: * 7107
[M::ha_hist_line] 174: * 7156
[M::ha_hist_line] 175: * 6966
[M::ha_hist_line] 176: * 6910
[M::ha_hist_line] 177: * 6780
[M::ha_hist_line] 178: * 6698
[M::ha_hist_line] 179: * 6470
[M::ha_hist_line] 180: * 6677
[M::ha_hist_line] 181: * 6656
[M::ha_hist_line] 182: * 6691
[M::ha_hist_line] 183: * 6566
[M::ha_hist_line] 184: * 6495
[M::ha_hist_line] 185: * 6405
[M::ha_hist_line] 186: * 6606
[M::ha_hist_line] 187: * 6536
[M::ha_hist_line] 188: * 6512
[M::ha_hist_line] 189: * 6629
[M::ha_hist_line] 190: * 6793
[M::ha_hist_line] 191: * 6657
[M::ha_hist_line] 192: * 6717
[M::ha_hist_line] 193: * 6760
[M::ha_hist_line] 194: * 6792
[M::ha_hist_line] 195: * 6894
[M::ha_hist_line] 196: * 6817
[M::ha_hist_line] 197: * 7118
[M::ha_hist_line] 198: * 6857
[M::ha_hist_line] 199: * 6913
[M::ha_hist_line] 200: * 6846
[M::ha_hist_line] 201: * 6803
[M::ha_hist_line] 202: * 6986
[M::ha_hist_line] 203: * 7164
[M::ha_hist_line] 204: * 6859
[M::ha_hist_line] 205: * 6987
[M::ha_hist_line] 206: * 6883
[M::ha_hist_line] 207: * 6680
[M::ha_hist_line] 208: * 6518
[M::ha_hist_line] 209: * 6708
[M::ha_hist_line] 210: * 6564
[M::ha_hist_line] 211: * 6519
[M::ha_hist_line] 212: * 6469
[M::ha_hist_line] 213: * 6281
[M::ha_hist_line] 214: * 6260
[M::ha_hist_line] 215: * 6087
[M::ha_hist_line] 216: * 6098
[M::ha_hist_line] 217: * 5949
[M::ha_hist_line] 218: * 6004
[M::ha_hist_line] rest: ******************************************* 503690
[M::ha_analyze_count] left: count[51] = 808436
[M::ha_analyze_count] right: none
[M::ha_pt_gen] peak_hom: 104; peak_het: 51
[M::ha_ct_shrink::62033.76818.84] ==> counted 70047842 distinct minimizer k-mers
[M::ha_pt_gen::] counting in normal mode
[M::yak_count] collected 5901812603 minimizers
[M::yak_count] collected 0 minimizers
[M::ha_pt_gen::63120.20118.82] ==> indexed 5895779919 positions, counted 70047842 distinct minimizer k-mers
[M::ha_assemble::111910.64519.33@113.117GB] ==> corrected reads for round 2
[M::ha_assemble] # bases: 214696971351; # corrected bases: 10547812; # recorrected bases: 40364
[M::ha_assemble] size of buffer: 2.020GB
[M::yak_count] collected 5901620463 minimizers
[M::yak_count] collected 0 minimizers
[M::ha_pt_gen::112907.97919.32] ==> counted 73840653 distinct minimizer k-mers
[M::ha_pt_gen] count[4095] = 0 (for sanity check)
[M::ha_analyze_count] lowest: count[7] = 56441
[M::ha_analyze_count] highest: count[104] = 1174146
[M::ha_hist_line] 1: **************************************************************************************************> 3840725
[M::ha_hist_line] 2: ****************************************************** 638425
[M::ha_hist_line] 3: ******************** 232390
[M::ha_hist_line] 4: ********** 121850
[M::ha_hist_line] 5: ******* 82159
[M::ha_hist_line] 6: ***** 62075
[M::ha_hist_line] 7: ***** 56441
[M::ha_hist_line] 8: ***** 57034
[M::ha_hist_line] 9: ***** 59044
[M::ha_hist_line] 10: ****** 64643
[M::ha_hist_line] 11: ****** 67074
[M::ha_hist_line] 12: ****** 70230
[M::ha_hist_line] 13: ****** 75635
[M::ha_hist_line] 14: ******* 77717
[M::ha_hist_line] 15: ******* 79695
[M::ha_hist_line] 16: ******* 83835
[M::ha_hist_line] 17: ******* 86918
[M::ha_hist_line] 18: ******** 92577
[M::ha_hist_line] 19: ******** 95663
[M::ha_hist_line] 20: ********* 99904
[M::ha_hist_line] 21: ********* 106063
[M::ha_hist_line] 22: ********** 112944
[M::ha_hist_line] 23: ********** 120144
[M::ha_hist_line] 24: *********** 130152
[M::ha_hist_line] 25: ************ 140856
[M::ha_hist_line] 26: ************* 152620
[M::ha_hist_line] 27: ************** 165046
[M::ha_hist_line] 28: *************** 178171
[M::ha_hist_line] 29: ***************** 194955
[M::ha_hist_line] 30: ****************** 211353
[M::ha_hist_line] 31: ******************* 228037
[M::ha_hist_line] 32: ********************* 252050
[M::ha_hist_line] 33: ************************ 277126
[M::ha_hist_line] 34: ************************** 301128
[M::ha_hist_line] 35: **************************** 330553
[M::ha_hist_line] 36: ******************************* 362152
[M::ha_hist_line] 37: ********************************** 394736
[M::ha_hist_line] 38: ************************************ 428266
[M::ha_hist_line] 39: **************************************** 464394
[M::ha_hist_line] 40: ******************************************* 507429
[M::ha_hist_line] 41: *********************************************** 549728
[M::ha_hist_line] 42: ************************************************** 592016
[M::ha_hist_line] 43: ****************************************************** 634456
[M::ha_hist_line] 44: ********************************************************* 668099
[M::ha_hist_line] 45: ************************************************************ 707903
[M::ha_hist_line] 46: *************************************************************** 742608
[M::ha_hist_line] 47: ****************************************************************** 770116
[M::ha_hist_line] 48: ******************************************************************* 783500
[M::ha_hist_line] 49: ******************************************************************** 801112
[M::ha_hist_line] 50: ********************************************************************* 808108
[M::ha_hist_line] 51: ********************************************************************* 808348
[M::ha_hist_line] 52: ******************************************************************** 799805
[M::ha_hist_line] 53: ******************************************************************* 781193
[M::ha_hist_line] 54: ***************************************************************** 759600
[M::ha_hist_line] 55: ************************************************************** 728988
[M::ha_hist_line] 56: *********************************************************** 695467
[M::ha_hist_line] 57: ******************************************************** 655166
[M::ha_hist_line] 58: **************************************************** 614579
[M::ha_hist_line] 59: ************************************************* 577028
[M::ha_hist_line] 60: ********************************************** 534562
[M::ha_hist_line] 61: ****************************************** 491801
[M::ha_hist_line] 62: *************************************** 454589
[M::ha_hist_line] 63: ************************************ 416981
[M::ha_hist_line] 64: ********************************* 387623
[M::ha_hist_line] 65: ******************************* 361157
[M::ha_hist_line] 66: ***************************** 338689
[M::ha_hist_line] 67: *************************** 320567
[M::ha_hist_line] 68: ************************** 309415
[M::ha_hist_line] 69: ************************** 299930
[M::ha_hist_line] 70: ************************* 292932
[M::ha_hist_line] 71: ************************* 290630
[M::ha_hist_line] 72: ************************* 294553
[M::ha_hist_line] 73: ************************** 300599
[M::ha_hist_line] 74: *************************** 312267
[M::ha_hist_line] 75: **************************** 327824
[M::ha_hist_line] 76: ***************************** 344912
[M::ha_hist_line] 77: ******************************* 363131
[M::ha_hist_line] 78: ********************************* 384730
[M::ha_hist_line] 79: *********************************** 407695
[M::ha_hist_line] 80: ************************************* 434517
[M::ha_hist_line] 81: *************************************** 461474
[M::ha_hist_line] 82: ****************************************** 491599
[M::ha_hist_line] 83: ********************************************* 524841
[M::ha_hist_line] 84: ************************************************ 561282
[M::ha_hist_line] 85: *************************************************** 594196
[M::ha_hist_line] 86: ****************************************************** 634446
[M::ha_hist_line] 87: ********************************************************* 670457
[M::ha_hist_line] 88: ************************************************************ 706324
[M::ha_hist_line] 89: *************************************************************** 742753
[M::ha_hist_line] 90: ******************************************************************* 785516
[M::ha_hist_line] 91: ********************************************************************** 826894
[M::ha_hist_line] 92: ************************************************************************** 868538
[M::ha_hist_line] 93: ***************************************************************************** 907158
[M::ha_hist_line] 94: ********************************************************************************* 946350
[M::ha_hist_line] 95: ************************************************************************************ 984800
[M::ha_hist_line] 96: *************************************************************************************** 1017605
[M::ha_hist_line] 97: ****************************************************************************************** 1052941
[M::ha_hist_line] 98: ******************************************************************************************** 1084107
[M::ha_hist_line] 99: *********************************************************************************************** 1110375
[M::ha_hist_line] 100: ************************************************************************************************ 1127046
[M::ha_hist_line] 101: ************************************************************************************************** 1147002
[M::ha_hist_line] 102: *************************************************************************************************** 1161258
[M::ha_hist_line] 103: *************************************************************************************************** 1166795
[M::ha_hist_line] 104: **************************************************************************************************** 1174146
[M::ha_hist_line] 105: **************************************************************************************************** 1169938
[M::ha_hist_line] 106: *************************************************************************************************** 1159116
[M::ha_hist_line] 107: ************************************************************************************************* 1144466
[M::ha_hist_line] 108: *********************************************************************************************** 1120483
[M::ha_hist_line] 109: ********************************************************************************************** 1102452
[M::ha_hist_line] 110: ******************************************************************************************* 1067011
[M::ha_hist_line] 111: **************************************************************************************** 1030913
[M::ha_hist_line] 112: ************************************************************************************ 990593
[M::ha_hist_line] 113: ********************************************************************************* 947668
[M::ha_hist_line] 114: ***************************************************************************** 909259
[M::ha_hist_line] 115: ************************************************************************* 862104
[M::ha_hist_line] 116: ********************************************************************* 810122
[M::ha_hist_line] 117: **************************************************************** 755647
[M::ha_hist_line] 118: ************************************************************ 705060
[M::ha_hist_line] 119: ******************************************************** 653215
[M::ha_hist_line] 120: *************************************************** 601638
[M::ha_hist_line] 121: *********************************************** 552385
[M::ha_hist_line] 122: ******************************************* 503226
[M::ha_hist_line] 123: *************************************** 454673
[M::ha_hist_line] 124: *********************************** 409805
[M::ha_hist_line] 125: ******************************* 366650
[M::ha_hist_line] 126: **************************** 329708
[M::ha_hist_line] 127: ************************* 294387
[M::ha_hist_line] 128: ********************** 260692
[M::ha_hist_line] 129: ******************** 230041
[M::ha_hist_line] 130: ***************** 203168
[M::ha_hist_line] 131: *************** 177887
[M::ha_hist_line] 132: ************* 154145
[M::ha_hist_line] 133: *********** 130931
[M::ha_hist_line] 134: ********* 111280
[M::ha_hist_line] 135: ******** 95199
[M::ha_hist_line] 136: ******* 81815
[M::ha_hist_line] 137: ****** 69706
[M::ha_hist_line] 138: ***** 58983
[M::ha_hist_line] 139: **** 51172
[M::ha_hist_line] 140: **** 43483
[M::ha_hist_line] 141: *** 37233
[M::ha_hist_line] 142: *** 31842
[M::ha_hist_line] 143: ** 28095
[M::ha_hist_line] 144: ** 23721
[M::ha_hist_line] 145: ** 20897
[M::ha_hist_line] 146: ** 19293
[M::ha_hist_line] 147: * 17308
[M::ha_hist_line] 148: * 15718
[M::ha_hist_line] 149: * 14372
[M::ha_hist_line] 150: * 13615
[M::ha_hist_line] 151: * 12752
[M::ha_hist_line] 152: * 11896
[M::ha_hist_line] 153: * 11444
[M::ha_hist_line] 154: * 10630
[M::ha_hist_line] 155: * 10193
[M::ha_hist_line] 156: * 10165
[M::ha_hist_line] 157: * 9874
[M::ha_hist_line] 158: * 9897
[M::ha_hist_line] 159: * 9380
[M::ha_hist_line] 160: * 9315
[M::ha_hist_line] 161: * 9124
[M::ha_hist_line] 162: * 8605
[M::ha_hist_line] 163: * 8436
[M::ha_hist_line] 164: * 8339
[M::ha_hist_line] 165: * 8333
[M::ha_hist_line] 166: * 8113
[M::ha_hist_line] 167: * 7950
[M::ha_hist_line] 168: * 7766
[M::ha_hist_line] 169: * 7613
[M::ha_hist_line] 170: * 7285
[M::ha_hist_line] 171: * 7477
[M::ha_hist_line] 172: * 6968
[M::ha_hist_line] 173: * 7051
[M::ha_hist_line] 174: * 7099
[M::ha_hist_line] 175: * 6962
[M::ha_hist_line] 176: * 6930
[M::ha_hist_line] 177: * 6741
[M::ha_hist_line] 178: * 6748
[M::ha_hist_line] 179: * 6419
[M::ha_hist_line] 180: * 6745
[M::ha_hist_line] 181: * 6598
[M::ha_hist_line] 182: * 6697
[M::ha_hist_line] 183: * 6565
[M::ha_hist_line] 184: * 6554
[M::ha_hist_line] 185: * 6430
[M::ha_hist_line] 186: * 6576
[M::ha_hist_line] 187: * 6579
[M::ha_hist_line] 188: * 6535
[M::ha_hist_line] 189: * 6693
[M::ha_hist_line] 190: * 6629
[M::ha_hist_line] 191: * 6632
[M::ha_hist_line] 192: * 6638
[M::ha_hist_line] 193: * 6815
[M::ha_hist_line] 194: * 6802
[M::ha_hist_line] 195: * 6924
[M::ha_hist_line] 196: * 6753
[M::ha_hist_line] 197: * 7019
[M::ha_hist_line] 198: * 6957
[M::ha_hist_line] 199: * 6940
[M::ha_hist_line] 200: * 6720
[M::ha_hist_line] 201: * 6881
[M::ha_hist_line] 202: * 6961
[M::ha_hist_line] 203: * 7065
[M::ha_hist_line] 204: * 6823
[M::ha_hist_line] 205: * 7008
[M::ha_hist_line] 206: * 6796
[M::ha_hist_line] 207: * 6695
[M::ha_hist_line] 208: * 6550
[M::ha_hist_line] 209: * 6808
[M::ha_hist_line] 210: * 6598
[M::ha_hist_line] 211: * 6562
[M::ha_hist_line] 212: * 6326
[M::ha_hist_line] 213: * 6300
[M::ha_hist_line] 214: * 6291
[M::ha_hist_line] 215: * 6053
[M::ha_hist_line] 216: * 6088
[M::ha_hist_line] 217: * 6026
[M::ha_hist_line] 218: * 6144
[M::ha_hist_line] rest: ******************************************* 504221
[M::ha_analyze_count] left: count[51] = 808348
[M::ha_analyze_count] right: none
[M::ha_pt_gen] peak_hom: 104; peak_het: 51
[M::ha_ct_shrink::112908.15419.32] ==> counted 69999928 distinct minimizer k-mers
[M::ha_pt_gen::] counting in normal mode
[M::yak_count] collected 5901620463 minimizers
[M::yak_count] collected 0 minimizers
[M::ha_pt_gen::113970.84719.31] ==> indexed 5897779738 positions, counted 69999928 distinct minimizer k-mers
Segmentation fault (core dumped)

I want to assembly a animal genome (~2.3Gb), my hifi data is ~200Gb and the memory is 500Gb. Could you please tell what's wrong with my assembly, thank you very much!

[chhylp123]

Sorry for the late reply. I guess it was caused by no enough memory. It would be better you can give hifiasm a little bit more memory.