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low BUSCO scores #628

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zuodabin opened this issue Mar 25, 2024 · 1 comment
Open

low BUSCO scores #628

zuodabin opened this issue Mar 25, 2024 · 1 comment

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@zuodabin
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Dear author, I got the assembly after running the software, but the estimated genome integrity is very low, C:54.2%[S:42.5%,D:11.7%],F:2.0%,M:43.8%,n:1013,E:4.0%, I am not sure what went wrong. I attach the running log and hope you can help me solve the problem
Thank you very much. All the best
hifi_1.txt

@chhylp123
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It seems that the HiFi dataset has issue by looking at the k-mer plot (see: https://hifiasm.readthedocs.io/en/latest/faq.html#why-does-hifiasm-stuck-or-crash).

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