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-> please specify either default assembly (hg38/GRCh37) or CHR_NAMES to plot! (see documentation)...
Error in createVCFplot(VCF, FASTA_FILE = "reference/Saccharomyces_cerevisiae.fa", :
Is there something else I need to put instead of this? I'm not sure what to put for the ASSEMBLY variable - I tried "S288C" as well and still the same error.
The text was updated successfully, but these errors were encountered:
I fixed that issue by inputting in my CHR_NAMES corresponding to my reference because its defaulting to human chromosome names. so something like this:
Hello, I'm trying to use this tool to visualize differences in variants in yeast strains - specifically Saccharomyces cerevisiae S288C.
I tried this code:
But I keep getting this error:
Is there something else I need to put instead of this? I'm not sure what to put for the
ASSEMBLY
variable - I tried "S288C" as well and still the same error.The text was updated successfully, but these errors were encountered: