Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Jump to bottom

Error with createVCFplot(VCF) function #6

Open
mglgc opened this issue Jan 20, 2023 · 1 comment
Open

Error with createVCFplot(VCF) function #6

mglgc opened this issue Jan 20, 2023 · 1 comment

Comments

@mglgc
Copy link

mglgc commented Jan 20, 2023

Hi,
After a successful plotVCF installation under R-4.2.0, the createVCFplot() function with the example shows next error message:

-> loading VCF file ...
-> passed VCF file extension: gz
-> indexing VCF file ...
Error in value[3L] : file does not appear to be bgzip'd
file: ./inst/extdata/exampleVCF.vcf.gz

I've tryed with some others bgzip'd .vcf files of my own but the same error is showed up. Any help to fix it will be welcome.
Thank you in advance for your reply.
@rmormando
Copy link

Did you ever figure out this error? I'm having trouble as well

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Assignees
No one assigned
Labels
None yet
Projects
None yet
Milestone
No milestone
Development

No branches or pull requests
2 participants
@mglgc @rmormando