{"payload":{"feedbackUrl":"https://github.com/orgs/community/discussions/53140","repo":{"id":87789709,"defaultBranch":"master","name":"V-pipe","ownerLogin":"cbg-ethz","currentUserCanPush":false,"isFork":false,"isEmpty":false,"createdAt":"2017-04-10T09:01:20.000Z","ownerAvatar":"https://avatars.githubusercontent.com/u/12068026?v=4","public":true,"private":false,"isOrgOwned":true},"refInfo":{"name":"","listCacheKey":"v0:1716982529.0","currentOid":""},"activityList":{"items":[{"before":"449fb9157b6ed8543ee1d3a569e43aa9bb94c28e","after":null,"ref":"refs/heads/add_virus_configs","pushedAt":"2024-05-29T11:35:29.000Z","pushType":"branch_deletion","commitsCount":0,"pusher":{"login":"LaraFuhrmann","name":null,"path":"/LaraFuhrmann","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/55209716?s=80&v=4"}},{"before":"9bd42ce857658fb5ea4dd68855273a11f12e440b","after":"999276dae6a7435a1ca492d930550b16e97e0296","ref":"refs/heads/master","pushedAt":"2024-05-28T21:10:24.000Z","pushType":"push","commitsCount":16,"pusher":{"login":"DrYak","name":"DrYak","path":"/DrYak","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/11413679?s=80&v=4"},"commit":{"message":"Keeping the linter happy: README.md titles","shortMessageHtmlLink":"Keeping the linter happy: README.md titles"}},{"before":"9fac09f0016769e5d136f04276d68da5b4b3ab6a","after":"999276dae6a7435a1ca492d930550b16e97e0296","ref":"refs/heads/rubicon","pushedAt":"2024-05-28T19:49:23.000Z","pushType":"force_push","commitsCount":0,"pusher":{"login":"DrYak","name":"DrYak","path":"/DrYak","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/11413679?s=80&v=4"},"commit":{"message":"Keeping the linter happy: README.md titles","shortMessageHtmlLink":"Keeping the linter happy: README.md titles"}},{"before":"9bd42ce857658fb5ea4dd68855273a11f12e440b","after":"9fac09f0016769e5d136f04276d68da5b4b3ab6a","ref":"refs/heads/rubicon","pushedAt":"2024-05-28T19:40:58.000Z","pushType":"push","commitsCount":15,"pusher":{"login":"DrYak","name":"DrYak","path":"/DrYak","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/11413679?s=80&v=4"},"commit":{"message":"Additional information\n\n- Makes sure that reviewers who lost their way and ended up stranded in\n the middle of the testing infrastructures find their way out and into\n the tutorials.","shortMessageHtmlLink":"Additional information"}},{"before":"25fd3a9117b763fa0fc71ffbbe064eb6d2ea9db1","after":"9bd42ce857658fb5ea4dd68855273a11f12e440b","ref":"refs/heads/master","pushedAt":"2024-05-28T11:12:08.000Z","pushType":"push","commitsCount":4,"pusher":{"login":"DrYak","name":"DrYak","path":"/DrYak","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/11413679?s=80&v=4"},"commit":{"message":"Compatibility version bump of dependencies\n\n- some old dependencies don't work anymore\n- ngshmmalign, bwa_QA, initial_vicuna_msa, msa, testbench\n depency mafft: 7.305->7.526\n- while we're at it, version bump smallgenomeutilities 0.4.1","shortMessageHtmlLink":"Compatibility version bump of dependencies"}},{"before":"0dda12ee7b49d684e8cd3fba587b92ca68d263ff","after":"9bd42ce857658fb5ea4dd68855273a11f12e440b","ref":"refs/heads/rubicon","pushedAt":"2024-05-28T10:18:00.000Z","pushType":"force_push","commitsCount":0,"pusher":{"login":"DrYak","name":"DrYak","path":"/DrYak","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/11413679?s=80&v=4"},"commit":{"message":"Compatibility version bump of dependencies\n\n- some old dependencies don't work anymore\n- ngshmmalign, bwa_QA, initial_vicuna_msa, msa, testbench\n depency mafft: 7.305->7.526\n- while we're at it, version bump smallgenomeutilities 0.4.1","shortMessageHtmlLink":"Compatibility version bump of dependencies"}},{"before":"a9d743d98883025a52df08e6ebab485abd00f0ac","after":"0dda12ee7b49d684e8cd3fba587b92ca68d263ff","ref":"refs/heads/rubicon","pushedAt":"2024-05-27T21:08:36.000Z","pushType":"force_push","commitsCount":0,"pusher":{"login":"DrYak","name":"DrYak","path":"/DrYak","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/11413679?s=80&v=4"},"commit":{"message":"Temporary work-around to test a new smgu","shortMessageHtmlLink":"Temporary work-around to test a new smgu"}},{"before":"fc9d7179a02ac504ef60ab3e10eabc56c72a20c9","after":"a9d743d98883025a52df08e6ebab485abd00f0ac","ref":"refs/heads/rubicon","pushedAt":"2024-05-27T20:57:31.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"DrYak","name":"DrYak","path":"/DrYak","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/11413679?s=80&v=4"},"commit":{"message":"Temporary work-around to test a new smgu","shortMessageHtmlLink":"Temporary work-around to test a new smgu"}},{"before":"aaa7162ff79752381876e6b4aa04141b134da0ae","after":"fc9d7179a02ac504ef60ab3e10eabc56c72a20c9","ref":"refs/heads/rubicon","pushedAt":"2024-05-27T15:41:20.000Z","pushType":"force_push","commitsCount":0,"pusher":{"login":"DrYak","name":"DrYak","path":"/DrYak","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/11413679?s=80&v=4"},"commit":{"message":"Compatibility version bump of dependencies\n\n- some old dependencies don't work anymore\n- ngshmmalign, bwa_QA, initial_vicuna_msa, msa, testbench\n depency mafft: 7.305->7.526\n- while we're at it, version bump smallgenomeutilities 0.4.0","shortMessageHtmlLink":"Compatibility version bump of dependencies"}},{"before":"0938ef11a6d6e8ffa16b2f9c2f4ae32863622ed2","after":"aaa7162ff79752381876e6b4aa04141b134da0ae","ref":"refs/heads/rubicon","pushedAt":"2024-05-27T15:29:13.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"DrYak","name":"DrYak","path":"/DrYak","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/11413679?s=80&v=4"},"commit":{"message":"Compatibility version bump of dependencies\n\n- some old dependencies don't work anymore\n- ngshmmalign depency mafft: 7.305->7.526","shortMessageHtmlLink":"Compatibility version bump of dependencies"}},{"before":"1652c89ffdcf8f3a581bb08926949682adf645c2","after":"0938ef11a6d6e8ffa16b2f9c2f4ae32863622ed2","ref":"refs/heads/rubicon","pushedAt":"2024-05-27T15:03:52.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"DrYak","name":"DrYak","path":"/DrYak","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/11413679?s=80&v=4"},"commit":{"message":"Modernize conda environment: channels\n\n- Do not rely on 'defaults' anymore but only 'conda-forge' as per\n bioconda recommendations","shortMessageHtmlLink":"Modernize conda environment: channels"}},{"before":"e610d27289d8169d796bc35988a88b30be073c36","after":"1652c89ffdcf8f3a581bb08926949682adf645c2","ref":"refs/heads/rubicon","pushedAt":"2024-05-27T14:44:59.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"DrYak","name":"DrYak","path":"/DrYak","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/11413679?s=80&v=4"},"commit":{"message":"Keeping the linter happy","shortMessageHtmlLink":"Keeping the linter happy"}},{"before":"25fd3a9117b763fa0fc71ffbbe064eb6d2ea9db1","after":"e610d27289d8169d796bc35988a88b30be073c36","ref":"refs/heads/rubicon","pushedAt":"2024-05-27T14:33:14.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"DrYak","name":"DrYak","path":"/DrYak","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/11413679?s=80&v=4"},"commit":{"message":"Snakemake workflow catalog standardized usage\n\nAdd `.snakemake-workflow-catalog.yml` file for configuring usage instructions for the Snakemake Workflow Catalog","shortMessageHtmlLink":"Snakemake workflow catalog standardized usage"}},{"before":"3eb06bb5b187772e66a7538fe6d8f1a1669459fd","after":"449fb9157b6ed8543ee1d3a569e43aa9bb94c28e","ref":"refs/heads/add_virus_configs","pushedAt":"2024-05-08T13:55:10.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"LaraFuhrmann","name":null,"path":"/LaraFuhrmann","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/55209716?s=80&v=4"},"commit":{"message":"add virus config: rsvb","shortMessageHtmlLink":"add virus config: rsvb"}},{"before":"011524dd31bbc23e6964d742b71e0e229f545127","after":"3eb06bb5b187772e66a7538fe6d8f1a1669459fd","ref":"refs/heads/add_virus_configs","pushedAt":"2024-05-08T09:34:56.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"LaraFuhrmann","name":null,"path":"/LaraFuhrmann","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/55209716?s=80&v=4"},"commit":{"message":"improve comment","shortMessageHtmlLink":"improve comment"}},{"before":"e669520e17d8a5c568ba2f9f6306aab0549142e8","after":"011524dd31bbc23e6964d742b71e0e229f545127","ref":"refs/heads/add_virus_configs","pushedAt":"2024-05-08T09:30:35.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"LaraFuhrmann","name":null,"path":"/LaraFuhrmann","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/55209716?s=80&v=4"},"commit":{"message":"[add virus config] config + resources for h3n2 ha segement - thx anika","shortMessageHtmlLink":"[add virus config] config + resources for h3n2 ha segement - thx anika"}},{"before":"ef636fe7dcdb677120e9cfae1807a228218a69b2","after":"e669520e17d8a5c568ba2f9f6306aab0549142e8","ref":"refs/heads/add_virus_configs","pushedAt":"2024-05-08T08:35:47.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"LaraFuhrmann","name":null,"path":"/LaraFuhrmann","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/55209716?s=80&v=4"},"commit":{"message":"add README for GitHub Actions .github/workflows directory","shortMessageHtmlLink":"add README for GitHub Actions .github/workflows directory"}},{"before":"9919ebf9fb02fa958555835a16da23076ed91c20","after":"ef636fe7dcdb677120e9cfae1807a228218a69b2","ref":"refs/heads/add_virus_configs","pushedAt":"2024-05-07T16:49:23.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"LaraFuhrmann","name":null,"path":"/LaraFuhrmann","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/55209716?s=80&v=4"},"commit":{"message":"add readme to test direcotry","shortMessageHtmlLink":"add readme to test direcotry"}},{"before":"9cafba17c4f8290096c3f6c392fa45b9c0da6cc1","after":"9919ebf9fb02fa958555835a16da23076ed91c20","ref":"refs/heads/add_virus_configs","pushedAt":"2024-05-07T10:24:38.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"LaraFuhrmann","name":null,"path":"/LaraFuhrmann","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/55209716?s=80&v=4"},"commit":{"message":"update readme with clarifications for tutorials","shortMessageHtmlLink":"update readme with clarifications for tutorials"}},{"before":"cb52480d4ef9ebf7d448370de01d63508c602fbf","after":"9cafba17c4f8290096c3f6c392fa45b9c0da6cc1","ref":"refs/heads/add_virus_configs","pushedAt":"2024-05-07T10:24:07.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"LaraFuhrmann","name":null,"path":"/LaraFuhrmann","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/55209716?s=80&v=4"},"commit":{"message":"update readme with clarifications for tutorials","shortMessageHtmlLink":"update readme with clarifications for tutorials"}},{"before":"732bf89d878aba12d202b89fe09ed00757e46690","after":"cb52480d4ef9ebf7d448370de01d63508c602fbf","ref":"refs/heads/add_virus_configs","pushedAt":"2024-05-07T10:23:05.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"LaraFuhrmann","name":null,"path":"/LaraFuhrmann","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/55209716?s=80&v=4"},"commit":{"message":"update readme with clarifications for tutorials","shortMessageHtmlLink":"update readme with clarifications for tutorials"}},{"before":"1b787933b636bde6dfa136567407817fda5e510a","after":"54dd6de5fbc5bbeba0358907884ab91ec270ad00","ref":"refs/heads/feature-benchmark","pushedAt":"2024-05-02T08:49:35.000Z","pushType":"push","commitsCount":4,"pusher":{"login":"LaraFuhrmann","name":null,"path":"/LaraFuhrmann","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/55209716?s=80&v=4"},"commit":{"message":"[add] notebooks for figures in manuscript","shortMessageHtmlLink":"[add] notebooks for figures in manuscript"}},{"before":"c16b3663c2ef392378f14d18f9adafc6cbf78f2b","after":"732bf89d878aba12d202b89fe09ed00757e46690","ref":"refs/heads/add_virus_configs","pushedAt":"2024-04-25T16:10:42.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"LaraFuhrmann","name":null,"path":"/LaraFuhrmann","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/55209716?s=80&v=4"},"commit":{"message":"add HSV2 virus config","shortMessageHtmlLink":"add HSV2 virus config"}},{"before":"c3553eb00400a51735f780e40ad14a23be3b3f30","after":"1b787933b636bde6dfa136567407817fda5e510a","ref":"refs/heads/feature-benchmark","pushedAt":"2024-04-25T08:30:23.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"LaraFuhrmann","name":null,"path":"/LaraFuhrmann","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/55209716?s=80&v=4"},"commit":{"message":"update viloca ewm for amplicon","shortMessageHtmlLink":"update viloca ewm for amplicon"}},{"before":"3711f386d34ec89edc01120919645c184a36274a","after":"c3553eb00400a51735f780e40ad14a23be3b3f30","ref":"refs/heads/feature-benchmark","pushedAt":"2024-04-23T13:51:48.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"LaraFuhrmann","name":null,"path":"/LaraFuhrmann","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/55209716?s=80&v=4"},"commit":{"message":"remove isfile() tst","shortMessageHtmlLink":"remove isfile() tst"}},{"before":"27ef96ebc0e34e7f0f1eb0e3ae91f5b7b837e974","after":"3711f386d34ec89edc01120919645c184a36274a","ref":"refs/heads/feature-benchmark","pushedAt":"2024-04-23T13:50:42.000Z","pushType":"push","commitsCount":2,"pusher":{"login":"LaraFuhrmann","name":null,"path":"/LaraFuhrmann","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/55209716?s=80&v=4"},"commit":{"message":"indel config","shortMessageHtmlLink":"indel config"}},{"before":"bbfe6047dcbd72ae7477c718bfe227d0ea254ced","after":"27ef96ebc0e34e7f0f1eb0e3ae91f5b7b837e974","ref":"refs/heads/feature-benchmark","pushedAt":"2024-04-23T13:37:39.000Z","pushType":"push","commitsCount":3,"pusher":{"login":"LaraFuhrmann","name":null,"path":"/LaraFuhrmann","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/55209716?s=80&v=4"},"commit":{"message":"fix indel ground truth and performance evaluationa","shortMessageHtmlLink":"fix indel ground truth and performance evaluationa"}},{"before":"30e312168a757eaf863321fbabdbd80921d41f45","after":"c16b3663c2ef392378f14d18f9adafc6cbf78f2b","ref":"refs/heads/add_virus_configs","pushedAt":"2024-04-19T08:20:25.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"LaraFuhrmann","name":null,"path":"/LaraFuhrmann","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/55209716?s=80&v=4"},"commit":{"message":"typo","shortMessageHtmlLink":"typo"}},{"before":"1fd3615c2cb4e8a1e56d37ed896bf09b351a2de8","after":"bbfe6047dcbd72ae7477c718bfe227d0ea254ced","ref":"refs/heads/feature-benchmark","pushedAt":"2024-04-18T13:44:59.000Z","pushType":"push","commitsCount":24,"pusher":{"login":"LaraFuhrmann","name":null,"path":"/LaraFuhrmann","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/55209716?s=80&v=4"},"commit":{"message":"update method defintions as run on cluster","shortMessageHtmlLink":"update method defintions as run on cluster"}},{"before":"6beafd4432075199e84b6e1e6f59e9e12dce8942","after":"30e312168a757eaf863321fbabdbd80921d41f45","ref":"refs/heads/add_virus_configs","pushedAt":"2024-04-15T16:08:17.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"LaraFuhrmann","name":null,"path":"/LaraFuhrmann","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/55209716?s=80&v=4"},"commit":{"message":"[Add] README for global haplo benchmark study","shortMessageHtmlLink":"[Add] README for global haplo benchmark study"}}],"hasNextPage":true,"hasPreviousPage":false,"activityType":"all","actor":null,"timePeriod":"all","sort":"DESC","perPage":30,"cursor":"djE6ks8AAAAEVt4Z_AA","startCursor":null,"endCursor":null}},"title":"Activity ยท cbg-ethz/V-pipe"}