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  1. MouseLand/suite2p MouseLand/suite2p Public

    cell detection in calcium imaging recordings

    Jupyter Notebook 323 228

  2. MouseLand/cellpose MouseLand/cellpose Public

    a generalist algorithm for cellular segmentation with human-in-the-loop capabilities

    Jupyter Notebook 1.1k 347

  3. MouseLand/rastermap MouseLand/rastermap Public

    a visualization method for neural data

    Python 155 41

  4. MouseLand/facemap MouseLand/facemap Public

    Framework for predicting neural activity from mouse orofacial movements tracked using a pose estimation model. Package also includes singular value decomposition (SVD) of behavioral videos.

    Python 147 57

  5. MouseLand/cellpose-napari MouseLand/cellpose-napari Public

    napari plugin for cellpose (see www.cellpose.org) - an anatomical segmentation tool

    Python 41 18

  6. MouseLand/Kilosort MouseLand/Kilosort Public

    Fast spike sorting with drift correction for up to a thousand channels

    Python 382 211