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segment.html
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segment.html
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<!DOCTYPE html>
<html>
<head>
<meta name="keywords" content="camicroscope, quip"/>
<meta charset='utf-8'>
<meta http-equiv='X-UA-Compatible' content='IE=edge'>
<meta name='viewport' content='width=device-width, initial-scale=1.0, maximum-scale=1.0, user-scalable=no'>
<title>caMicroscope</title>
<!-- google material icons css sheet -->
<link href="https://fonts.googleapis.com/css2?family=Material+Icons"
rel="stylesheet">
<!-- common css START -->
<link rel='stylesheet' type='text/css' media='all' href='../../css/style.css'/>
<!-- color picker css -->
<link rel='stylesheet' type='text/css' media='all' href='../../common/colorpicker/color-picker.css'/>
<!-- add pure-form css -->
<link rel='stylesheet' type='text/css' media='all' href='../../common/pureform/pure-form.css'/>
<link rel='stylesheet' type='text/css' media='all' href='./segmentpanel/segmentpanel.css'/>
<!-- common css END -->
<!-- UI components css START -->
<!-- message display bar css -->
<link rel='stylesheet' type='text/css' media='all' href='../../components/camessage/camessage.css'/>
<!-- toolbar css -->
<link rel='stylesheet' type='text/css' media='all' href='../../components/toolbar/toolbar.css'/>
<!-- side menu css -->
<link rel='stylesheet' type='text/css' media='all' href='../../components/sidemenu/sidemenu.css'/>
<!-- layers controller css -->
<link rel='stylesheet' type='text/css' media='all' href='../../components/layersviewer/layersviewer.css'/>
<!-- collapsible list css -->
<link rel='stylesheet' type='text/css' media='all' href='../../components/collapsiblelist/collapsiblelist.css'/>
<!-- operation panel css -->
<link rel='stylesheet' type='text/css' media='all' href='../../components/operationpanel/operationpanel.css'/>
<!-- mult selector css -->
<link rel='stylesheet' type='text/css' media='all' href='../../components/multselector/multselector.css'/>
<!-- stylecontextmenu css -->
<link rel='stylesheet' type='text/css' media='all' href='../../components/simplecontextmenu/simplecontextmenu.css'/>
<!-- message queue css -->
<link rel='stylesheet' type='text/css' media='all' href='../../components/messagequeue/messagequeue.css'/>
<!-- loading cover css -->
<link rel='stylesheet' type='text/css' media='all' href='../../components/loading/loading.css'/>
<!-- popup panel css -->
<link rel='stylesheet' type='text/css' media='all' href='../../components/popuppanel/popuppanel.css'/>
<!-- add spyglass css -->
<link rel='stylesheet' type='text/css' media='all' href='../../components/spyglass/spyglass.css'/>
<!-- modal box -->
<link rel="stylesheet" type="text/css" media="all" href="../../components/modalbox/modalbox.css" />
<!-- Popup -->
<link rel="stylesheet" type="text/css" media="all" href="../../css/popup.css" />
<!-- UI components css END -->
<!-- osd & core css START -->
<!-- zoom control css -->
<link rel='stylesheet' type='text/css' media='all' href='../../core/extension/openseadragon-zoom-control/openseadragon-zoom-control.css'/>
<!-- mesurement tool css -->
<link rel='stylesheet' type='text/css' media='all' href='../../core/extension/openseadragon-measurement-tool/openseadragon-measurement-tool.css'/>
<!-- osd & core css END -->
<!-- Check If we're logged in ok, otherwise, log in for us -->
<script src='../../common/authChecker.js'></script>
<script>
__auth_check(2)
</script>
<!-- opencv.js -->
<script type='text/javascript' src='./opencv.js'></script>
<!-- tensorflow.js -->
<script type='text/javascript' src='../../common/tf.min.js'></script>
<!-- tfjs visulisation -->
<script type='text/javascript' src='../../common/tfjs-vis.min.js'></script>
<!-- common js START -->
<!-- util.js -->
<script type='text/javascript' src='../../common/util.js'></script>
<script type='text/javascript' src='../../common/DrawHelper.js'></script>
<script type='text/javascript' src='../../common/simplify.js'></script>
<script type='text/javascript' src='../../common/paths.js'></script>
<!-- add pure-form script -->
<script type='text/javascript' src='../../common/pureform/document-register-element.js'></script>
<script type='text/javascript' src='../../common/pureform/pure-form.js'></script>
<!-- color picker js -->
<script type='text/javascript' src='../../common/colorpicker/color-picker.js'></script>
<!-- sortable js -->
<script type='text/javascript' src='../../common/sortable/Sortable.js'></script>
<!-- AJV json validator engine -->
<script type='text/javascript' src='../../common/ajv.js'></script>
<!-- IDB helper -->
<script type='text/javascript' src='../../common/idb.js'></script>
<!-- Color Separation -->
<script type='text/javascript' src='../../common/colorSeparation.js'></script>
<!-- common js END -->
<!-- components js START -->
<!-- message display js -->
<script type='text/javascript' src='../../components/camessage/camessage.js'></script>
<!-- toolbar js -->
<script type='text/javascript' src='../../components/toolbar/toolbar.js'></script>
<!-- sidemenu js -->
<script type='text/javascript' src='../../components/sidemenu/sidemenu.js'></script>
<!-- collapsible list js -->
<script type='text/javascript' src='../../components/collapsiblelist/collapsiblelist.js'></script>
<!-- layers controller js -->
<script type='text/javascript' src='../../components/layersviewer/layersviewer.js'></script>
<!-- operation panel js -->
<script type='text/javascript' src='../../components/operationpanel/operationpanel.js'></script>
<!-- loading cover js -->
<script type='text/javascript' src='../../components/loading/loading.js'></script>
<!-- stylecontextmenu js -->
<script type='text/javascript' src='../../components/simplecontextmenu/simplecontextmenu.js'></script>
<!-- popup panel js -->
<script type='text/javascript' src='../../components/popuppanel/popuppanel.js'></script>
<!-- message queue js -->
<script type='text/javascript' src='../../components/messagequeue/messagequeue.js'></script>
<!-- mult selector js -->
<script type='text/javascript' src='../../components/multselector/multselector.js'></script>
<!-- spyglass -->
<script type='text/javascript' src='../../components/spyglass/spyglass.js'></script>
<!-- script type='text/javascript' src='segmentpanel/slider.js'></script -->
<script type='text/javascript' src='./segmentpanel/segmentpanel.js'></script>
<!-- modal box -->
<script type="text/javascript" src="../../components/modalbox/modalbox.js"></script>
<!-- components js END -->
<!-- osd & core js START -->
<script type='text/javascript' src='../../core/openseadragon/openseadragon.js' ></script>
<script type='text/javascript' src='../../core/openseadragon-imaginghelper.min.js'></script>
<script type='text/javascript' src='../../core/openseadragon-scalebar.js'></script>
<script type='text/javascript' src='../../core/openseadragonzoomlevels.js'></script>
<!-- core (package/ext) libs -->
<script type='text/javascript' src='../../core/StatesHelper.js'></script>
<script type='text/javascript' src='../../core/Validation.js'></script>
<script type='text/javascript' src='../../core/Store.js'></script>
<script type='text/javascript' src='../../core/CaMic.js'></script>
<script type='text/javascript' src='../../core/extension/segment-annotation.js'></script>
<script type='text/javascript' src='../../core/extension/openseadragon-canvas-draw-overlay.js'></script>
<script type='text/javascript' src='../../core/extension/openseadragon-overlays-manage.js'></script>
<script type='text/javascript' src='../../core/extension/openseadragon-measurement-tool/openseadragon-measurement-tool.js'></script>
<script type='text/javascript' src='../../core/extension/openseadragon-zoom-control/openseadragon-zoom-control.js'></script>
<!-- business js -->
<script type='text/javascript' src='../../common/PathdbMods.js'></script>
<script type='text/javascript' src='../../common/LocalStore.js'></script>
<script type='text/javascript' src='../../common/NanoBorbMods.js'></script>
<script type='text/javascript' src='../../common/dynamicLoadScript.js'></script>
<!-- <script src="../../dist/imgbox_package.js"></script> -->
<!--
<script src='../viewer/uicallbacks.js'></script>
<script src='../viewer/dataloaders.js'></script>
<script src='../viewer/init.js'></script>
-->
<script src="https://code.jquery.com/jquery-3.4.1.min.js"></script>
<script type="text/javascript" src="//stuk.github.io/jszip/dist/jszip.js"></script>
<script type="text/javascript" src="//stuk.github.io/jszip-utils/dist/jszip-utils.js"></script>
<script type="text/javascript" src="//stuk.github.io/jszip/vendor/FileSaver.js"></script>
<script type='text/javascript' src='../../common/sizeof.compressed.js'></script>
<!-- Popper & tippy -->
<script src="https://unpkg.com/@popperjs/core@2"></script>
<script src="https://unpkg.com/tippy.js@6"></script>
<!-- Smartpen -->
<script type="text/javascript" src="../../common/enhance.js"></script>
<script type="text/javascript" src="../../common/smartpen/autoalign.js"></script>
<link rel="stylesheet" type="text/css" media="all" href="../../common/smartpen/autoalign.css"/>
<!-- Smartpen end -->
<!-- segment css -->
<link rel="stylesheet" type='text/css' href='./segment.css'>
</head>
<body>
<!-- toolbar -->
<div id='ca_tools'></div>
<div id='main_viewer' class='main'></div>
<div id="model_info"></div>
<div id="upload_panel"></div>
<div id="roi_panel"></div>
<div id="choice_panel"></div>
<div id="details_panel"></div>
<div id="popup-container"></div>
<div id="snackbar"></div>
</body>
<script src='segment.js'></script>
<script type="text/javascript">
if(detectIE()){
createWarningText('You are using an <strong>IE/Edge</strong> browser that may be lead to erratic behavior on caMicroscope. Please switch to <a href="https://www.google.com/chrome/">Chrome</a>, <a href="https://www.mozilla.org/en-US/firefox/new/">Firefox</a> or <a href="https://www.apple.com/safari/">Safari</a> browser to improve your experience.');
}
//Loading.open(document.body, 'CaMicroscope is initializing...');
// get slide id from url
$D.params = getUrlVars();
// load if we have at least one slide query element
if($D.params && $D.params.slideId){
// normal initialization starts
document.addEventListener('DOMContentLoaded', initialize);
}
else if ($D.params && ($D.params.slide || $D.params.specimen ||$D.params.study || $D.params.location)){
let STORE = new Store()
STORE.findSlide($D.params.slide, $D.params.study, $D.params.specimen, $D.params.location).then(x=>{
let offset = parseInt($D.params.offset,10) || 0;
if(x.length == 0 || offset >= x.length){
redirect($D.pages.table,'No Slide Found. Redirecting To Table.');
} else {
newParams = $D.params
delete newParams.data
delete newParams.slide
delete newParams.location
delete newParams.offset
newParams.slideId = x[offset]['_id']['$oid']
newUrl = window.location.href.split("?")[0] + "?" + objToParamStr(newParams)
window.location.href = newUrl
}
}).catch(e=>{
console.warn(e)
redirect($D.pages.table,'Redirecting To Table.');
})
// find the associated slideID
// open viewer with that slideID
}
else {
redirect($D.pages.table,'Slide Is Undefined. Redirecting To Table.');
}
// get states parameters
if($D.params.states)
$D.params.states = StatesHelper.decodeStates($D.params.states);
</script>
</html>