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add length threshold to metagenomics.py::assemble_spades #874

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tomkinsc opened this issue Jul 31, 2018 · 0 comments
Open

add length threshold to metagenomics.py::assemble_spades #874

tomkinsc opened this issue Jul 31, 2018 · 0 comments
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@notestaff
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enhancement
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v1.21.3

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@tomkinsc
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Spades produces many short contigs. It may be helpful to have an optional parameter for metagenomics.py::assemble_spades, perhaps --minContigLength, to only write contigs greater in length than a specified value.
@dpark01 dpark01 added this to To do in v1.21.3 Oct 1, 2018
@notestaff notestaff moved this from To do this release to In progress in v1.21.3 Oct 18, 2018
@notestaff notestaff mentioned this issue Oct 18, 2018
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@notestaff notestaff moved this from In progress to To do this release in v1.21.3 Oct 18, 2018
@notestaff notestaff moved this from To do this release to In progress in v1.21.3 Oct 18, 2018
@notestaff notestaff moved this from In progress to Needs review in v1.21.3 Oct 18, 2018
notestaff added a commit that referenced this issue Oct 22, 2018
@notestaff
assembly.assemble_spades: added option to drop contigs shorter than g…
fbf6003 
…iven length. (#889)

assembly.assemble_spades: added option to drop contigs shorter than given length (for #874)
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@notestaff notestaff

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enhancement
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v1.21.3
  
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@tomkinsc @notestaff